Information on SUBCLASS 3.34.1 |
Subclass Accession number: 5580
Subclass: 3.34.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1 (>75 %) GO : GO:0016874 (>50 %) SCOP : 49817 (>75 %) 49818 (>75 %) 49823 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 48.1 +/- 20.9 Average RMSD (Å) : 0.375 +/- 0.096 Consensus geometry
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Consensus Sequence: | LYppXcX |
(φψ)-conformation: | aaGpabb |
Pattern: | [ADS] | [AKT] | x | [Q] | [QT] | [KNS] | [L] | [Y] | [QT] | [NR] | [AEPT] | [DNT] | [AT] | [TY] | [TV] | [S] | [V] | [GTV] |
Conservation: | -0.764 | -0.843 | -0.886 | 1.436 | -0.391 | -0.304 | 0.821 | 2.666 | -0.270 | 0.264 | -1.217 | -0.380 | -0.212 | -0.056 | -0.236 | 0.821 | 0.821 | -1.270 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1jsd_A_178 | 1jsd | A | 178 | 195 | DTVQTNLYTRTDTTTSVT | HHHHHHHHS-S---EEEE | aaaaaaaavbabbbbbbb |
1jsm_A_184 | 1jsm | A | 184 | 201 | AAEQTKLYQNPTTYVSVG | HHHHHHHHS-SS--EEEE | aaaaaaaaGxabbbbbbb |
1rv0_H_188 | 1rv0 | H | 188 | 205 | STDQQSLYQNADAYVSVG | HHHHHHHHS-SS--EEEE | aaaaaaaaUxabxbbbbb |
1rvx_A_188 | 1rvx | A | 188 | 205 | SKEQQNLYQNENAYVSVV | HHHHHHHHS-SS--EEEE | aaaaaaaaGxabxbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1rvx_A_188 | 1rvx | A | SIAO-SIALIC ACID | E - 190 |
1rvx_A_188 | 1rvx | A | GALD-GALACTOSE | E - 190 |
1rvx_A_188 | 1rvx | A | SIAO-SIALIC ACID | L - 194 |
1rvx_A_188 | 1rvx | A | SIAO-SIALIC ACID | Y - 195 |
Clusters included in this Subclass |
CLUSTER: HE.5.240 |