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Information on SUBCLASS 4.1.2
Subclass Accession number: 5588
Subclass: 4.1.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 24

Average sequence ID (%) : 14.5 +/- 15.9
Average RMSD (Å) : 0.800 +/- 0.311

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXphXh
(φψ)-conformation: aabaapbb
Pattern: x[adegknqr][acfiklv]x[aeknqrt]xx[aepqs][dehknqst][acfilvy][dehkpqrst][afgilmptv]x
Conservation:-0.927-0.9470.202-0.3560.061-0.772-0.6332.7691.0370.086-0.392-0.3520.223
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a4y_A_2141a4y   A219231CGIVASKASLRELHHHHHH-TT--EEaaaaaaxaaxabb
1ckq_A_351ckq   A4456KALSNEYPQLSFRHHHHHH-TTS-EEaaaaaabaabbbb
1d2k_A_1071d2k   A113125YLLKKNNRNLKTLHHHHHH-TT-EEEaaaaaabaaxbbb
1dys_A_1171dys   A121133AQKLKAASDVQFAHHHHHH-TTS-EEaaaaaaxaabxbb
1edq_A_2511edq   A257269MALKQAHPDLKILHHHHHH-TT-EEEaaaaaabaaxxbb
1f6d_A_2201f6d   A230242ADIATTHQDIQIVHHHHHH-TT--EEaaaaaabaabbbb
1fiq_B_2421fiq   B246257LDLKAQHPEAKL.HHHHHH-TT-EE.aaaaaabaapbx.
1fzr_A_721fzr   A7991LLIREQHPELDIRHHHHHH-TT-EEEaaaaaabaaxbbb
1g99_A_1241g99   A132144SACAEIMPGTPMVHHHHHH-TTS-EEaaaaaabaaxpbb
1gnu_A_111gnu   A1931EKIRKKYPDRVPVHHHHHH-TTEEEEaaaaaabaabbwb
1gtk_A_1301gtk   A134146CQLAERRPDLIIRHHHHHH-TTSEEEaaaaaabaaxxxb
1ii2_A_111ii2   A1627QWALKIEKDSRL.HHHHHH-TT-EE.aaaaaaxaaxbb.
1jlr_A_1991jlr   A203215ERVFKEYPKVRMVHHHHHH-TT-EEEaaaaaabaaxbbb
1o6b_A_1021o6b   A104116SVNRVLDESIETFHHHHHH-TTSEEEaaaaaabaabxbb
1oap_A_641oap   A7183ANFLRSNPSYKVTHHHHHT-TT--EEaaaaaabaaxbbb
1ols_B_231ols   B3244DNSLAKDPTAVIFHHHHHH-TT-EEEaaaaaabaaxbbb
1poi_B_331poi   B4052VAKRVYAPDCHIIHHHHTT-TT-EEEaaaaaabaaxbxb
1qkk_A_631qkk   A6880RKILALDPDLPMIHHHHHH-TTS-EEaaaaaabaaxpbb
1qzz_A_1951qzz   A198210AAIALRAPHLRGTHHHHHH-TT-EEEaaaaaabaaxbbb
1rku_A_1731rku   A173185ENVIREFPQFPAVHHHHHH-TTS-EEaaaaaabaabpbb
1tmy_*_621tmy   -6779KEIMKIDPNAKIIHHHHHH-TT--EEaaaaaabaaxbbb
1v4v_A_2141v4v   A222234KRVAEAFPHLTFVHHHHHH-TTSEEEaaaaaabaabbxb
1yac_A_701yac   A7082PELKAQFPDAPYIHHHHHH-TTS-EEaaaaaabaaxpbb
2bnh_*_2082bnh   -215227CGIVASQASLRELHHHHHH-TT--EEaaaaaaxaapabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f6d_A_2201f6d   A     MSESELENOMETHIONINE I - 225
1f6d_A_2201f6d   A     MSESELENOMETHIONINE A - 228
1f6d_A_2201f6d   A     MSESELENOMETHIONINE L - 229
1f6d_A_2201f6d   A     MSESELENOMETHIONINE D - 238
1f6d_A_2201f6d   A     MSESELENOMETHIONINE I - 239
1f6d_A_2201f6d   A     MSESELENOMETHIONINE Q - 240
1f6d_A_2201f6d   A     MSESELENOMETHIONINE I - 241
1f6d_A_2201f6d   A     MSESELENOMETHIONINE V - 242
1f6d_A_2201f6d   A     UDPURIDINE-5'-DIPHOSPHATE P - 244
1fiq_B_2421fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE A - 255
1fiq_B_2421fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE K - 256
1fiq_B_2421fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE L - 257
1gtk_A_1301gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID L - 130
1gtk_A_1301gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID R - 131
1gtk_A_1301gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID R - 132
1o6b_A_1021o6b   A     MSESELENOMETHIONINE G - 102
1o6b_A_1021o6b   A     MSESELENOMETHIONINE T - 103
1o6b_A_1021o6b   A     MSESELENOMETHIONINE S - 104
1o6b_A_1021o6b   A     MSESELENOMETHIONINE V - 105
1o6b_A_1021o6b   A     MSESELENOMETHIONINE F - 116
1qzz_A_1951qzz   A     ACTACETATE ION G - 195
1qzz_A_1951qzz   A     SAMS-ADENOSYLMETHIONINE G - 195
1qzz_A_1951qzz   A     ACTACETATE ION M - 196
1qzz_A_1951qzz   A     SAMS-ADENOSYLMETHIONINE M - 196
1qzz_A_1951qzz   A     ACTACETATE ION L - 197
1qzz_A_1951qzz   A     ACTACETATE ION A - 198
1qzz_A_1951qzz   A     ACTACETATE ION L - 211
1qzz_A_1951qzz   A     SAMS-ADENOSYLMETHIONINE V - 212
1qzz_A_1951qzz   A     SAMS-ADENOSYLMETHIONINE E - 213
1v4v_A_2141v4v   A     MSESELENOMETHIONINE L - 214
1v4v_A_2141v4v   A     MSESELENOMETHIONINE L - 217
1v4v_A_2141v4v   A     MSESELENOMETHIONINE A - 218
1v4v_A_2141v4v   A     MSESELENOMETHIONINE L - 221
1v4v_A_2141v4v   A     MSESELENOMETHIONINE Y - 235
1v4v_A_2141v4v   A     MSESELENOMETHIONINE P - 236
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gtk_A_1301gtk   A AC1DPM BINDING SITE FOR CHAIN AR - 132

Clusters included in this Subclass
CLUSTER: HE.4.356
CLUSTER: HE.4.39
CLUSTER: HE.5.40
CLUSTER: HE.5.88
CLUSTER: HE.6.263
CLUSTER: HE.6.71