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Information on SUBCLASS 4.2.1
Subclass Accession number: 5597
Subclass: 4.2.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 45

Average sequence ID (%) : 18.5 +/- 19.5
Average RMSD (Å) : 0.409 +/- 0.152

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpcXhphh
(φψ)-conformation: aalababb
Pattern: xx[acfgiklv]x[adegknrst][dgknr]x[afilmtv][adkqrst][acfgilmvy][afgiltv]
Conservation:-1.090-0.7970.671-0.695-0.2112.257-0.3850.9260.425-0.943-0.159
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b93_A_701b93   A7686ALISEGKIDVLHHHHTT---EEaaaaavababb
1bam_*_1171bam   -129139LGLKHGEIDLAHHHHTTS-SEEaaaaavababb
1ce2_A_3771ce2   A382392ALVLKGEADALHHHHTTS--EEaaaaavababb
1dc1_A_2861dc1   A294304DQLQSGSLTNSHHHHHTSS-EEaaaaavababb
1drk_*_2181drk   -222232KAVNDGKLAATHHHHHTSS-EEaaaaavababb
1efv_B_401efv   B5161RLKEKKLVKEVHHHHTTS-SEEaaaaavababb
1gtk_A_631gtk   A6878VALLENRADIAHHHHTTS-SEEaaaaavababb
1gud_A_2301gud   A234244KMVEAGQMTATHHHHHTSS-EEaaaaavababb
1hsl_A_1431hsl   A148158SDLTAGRIDAAHHHHHTSSSEEaaaaavababb
1i6a_A_1291i6a   A134144AQLDSGKLDAVHHHHHTS-SEEaaaaagababb
1ii5_A_541ii5   A5969TAVAEGELDILHHHHTTS-SEEaaaaavababb
1iwp_A_2061iwp   A211221ELGMRGLTSYAHHHHTTS-SEEaaaaavababb
1ixc_A_1291ixc   A134144EGLLAGTIHVGHHHHHTS-SEEaaaaavababb
1jx6_A_2931jx6   A297307DAIQKGDLDITHHHHHTSS-EEaaaaavababb
1kr4_A_171kr4   A2636KLLEKRLIACFHHHHTTS-SEEaaaaalababb
1lst_*_1431lst   -148158SDLTAGRLDAAHHHHTTS-SEEaaaaavababb
1lst_*_551lst   -5767PSLKAKKIDAIHHHHTTS-SEEaaaaavababb
1m4j_A_111m4j   A1828ARARNGKYRLLHHHHTTT-SEEaaaaagababb
1mqi_A_731mqi   A7686GELVYGKADIAHHHHTTS-SEEaaaaavababb
1naq_A_211naq   A3040KVLAEKLAACAHHHHTTS-SEEaaaaalababb
1nh8_A_1421nh8   A142152ISVQLGVADAIHHHHTTS-SEEaaaaavababb
1nkx_A_3771nkx   A382392VLVLKGEADALHHHHHTS--EEaaaaavababb
1nn4_A_431nn4   A5262LAVAGGEVDGGHHHHTTSSSEEaaaaaUababb
1nnf_A_1751nnf   A180190QAVENGEVPAAHHHHTTS-SEEaaaaavababb
1nza_A_121nza   A2131ALVEERLAACVHHHHTTS-SEEaaaaalababb
1o1x_A_421o1x   A5161QSILSNEADFGHHHHTTS-SEEaaaaalababb
1o6z_A_311o6z   A3949NIALRDIADEVHHHHTT--SEEaaaaalababb
1o7t_A_1751o7t   A180190QAVENGEVDAAHHHHHTSSSEEaaaaavababb
1on3_A_4781on3   A480490VAAARGQVDDVHHHHTTSSSEEaaaaavababb
1osc_A_211osc   A3040AVVEKRLAACVHHHHTTS-SEEaaaaavababb
1oyw_A_2721oyw   A280290EKFQRDDLQIVHHHHTTS-SEEaaaaavababb
1p1l_A_121p1l   A2131RLLEKKLAACVHHHHTTS-SEEaaaaavababb
1p99_A_781p99   A8090KALNDGDIDMNHHHHTTSSSEEaaaaavababb
1pb7_A_1081pb7   A111121GELLSGQADMIHHHHHTS-SEEaaaaagababb
1pb7_A_2061pb7   A211221QAVRDNKLHAFHHHHTTS-SEEaaaaavababb
1ptm_A_931ptm   A106116DGCLNGEFAALHHHHHTS-SEEaaaaavababb
1r8k_A_941r8k   A106116DGCLNGEFAALHHHHTTS-SEEaaaaavababb
1r9l_A_461r9l   A5161TSLASGDATFTHHHHHTSS-EEaaaaavababb
1s14_A_10331s14   A10451055DEALAGHAKRVHHHHTTS-SEEaaaaavababb
1s16_A_10331s16   A10451055DEALAGHAKRVHHHHTT--SEEaaaaavababb
1uiu_A_2021uiu   A207217VAFETGDIDLLHHHHTTS-SEEaaaaavababb
1uku_A_111uku   A2030TLLKERLIACAHHHHTTS-SEEaaaaavababb
1uyr_A_17801uyr   A17821792IMYNNGVSHLTHHHHHTSSSEEaaaaavaxabb
1wdn_A_1391wdn   A144154MELGTNRADAVHHHHTTS-SEEaaaaavababb
1wdn_A_531wdn   A5565PALQTKNVDLAHHHHTTSSSEEaaaaalababb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b93_A_701b93   A     FMTFORMIC ACID D - 71
1b93_A_701b93   A     FMTFORMIC ACID F - 88
1efv_B_401efv   B     FADFLAVIN-ADENINE DINUCLEOTIDE P - 40
1efv_B_401efv   B     FADFLAVIN-ADENINE DINUCLEOTIDE F - 41
1efv_B_401efv   B     AMPADENOSINE MONOPHOSPHATE F - 41
1efv_B_401efv   B     AMPADENOSINE MONOPHOSPHATE C - 42
1efv_B_401efv   B     AMPADENOSINE MONOPHOSPHATE A - 45
1efv_B_401efv   B     AMPADENOSINE MONOPHOSPHATE V - 64
1efv_B_401efv   B     AMPADENOSINE MONOPHOSPHATE S - 65
1efv_B_401efv   B     AMPADENOSINE MONOPHOSPHATE C - 66
1efv_B_401efv   B     AMPADENOSINE MONOPHOSPHATE G - 67
1gtk_A_631gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID S - 81
1gud_A_2301gud   A     ZNZINC ION R - 233
1gud_A_2301gud   A     ZNZINC ION E - 237
1ii5_A_541ii5   A     GLUGLUTAMIC ACID I - 54
1ii5_A_541ii5   A     GLUGLUTAMIC ACID P - 72
1ii5_A_541ii5   A     GLUGLUTAMIC ACID I - 73
1ii5_A_541ii5   A     GLUGLUTAMIC ACID S - 74
1iwp_A_2061iwp   A     B12COBALAMIN E - 206
1iwp_A_2061iwp   A     B12COBALAMIN E - 209
1iwp_A_2061iwp   A     PGO1,2-PROPANEDIOL E - 222
1iwp_A_2061iwp   A     B12COBALAMIN T - 223
1iwp_A_2061iwp   A     PGO1,2-PROPANEDIOL T - 223
1iwp_A_2061iwp   A     B12COBALAMIN V - 224
1iwp_A_2061iwp   A     B12COBALAMIN S - 225
1ixc_A_1291ixc   A     MSESELENOMETHIONINE K - 129
1ixc_A_1291ixc   A     MSESELENOMETHIONINE E - 131
1ixc_A_1291ixc   A     MSESELENOMETHIONINE Q - 132
1ixc_A_1291ixc   A     MSESELENOMETHIONINE G - 135
1ixc_A_1291ixc   A     MSESELENOMETHIONINE T - 140
1ixc_A_1291ixc   A     MSESELENOMETHIONINE I - 141
1ixc_A_1291ixc   A     MSESELENOMETHIONINE F - 145
1jx6_A_2931jx6   A     AI23A-METHYL-5,6-DIHYDRO-FURO[2,3-D][1,3,2]DIOXABOROLE-2, 2,6,6A-TETRAOL E - 295
1jx6_A_2931jx6   A     AI23A-METHYL-5,6-DIHYDRO-FURO[2,3-D][1,3,2]DIOXABOROLE-2, 2,6,6A-TETRAOL R - 310
1naq_A_211naq   A     MBOMERCURIBENZOIC ACID T - 23
1naq_A_211naq   A     HGMERCURY (II) ION L - 27
1naq_A_211naq   A     MBOMERCURIBENZOIC ACID L - 27
1naq_A_211naq   A     HGMERCURY (II) ION E - 34
1naq_A_211naq   A     HGMERCURY (II) ION L - 36
1naq_A_211naq   A     HGMERCURY (II) ION A - 38
1naq_A_211naq   A     MBOMERCURIBENZOIC ACID A - 38
1naq_A_211naq   A     HGMERCURY (II) ION C - 39
1naq_A_211naq   A     MBOMERCURIBENZOIC ACID C - 39
1naq_A_211naq   A     HGMERCURY (II) ION A - 40
1naq_A_211naq   A     MBOMERCURIBENZOIC ACID A - 40
1naq_A_211naq   A     HGMERCURY (II) ION T - 41
1naq_A_211naq   A     MBOMERCURIBENZOIC ACID T - 41
1naq_A_211naq   A     HGMERCURY (II) ION S - 48
1naq_A_211naq   A     MBOMERCURIBENZOIC ACID S - 48
1naq_A_211naq   A     HGMERCURY (II) ION L - 49
1naq_A_211naq   A     MBOMERCURIBENZOIC ACID L - 49
1naq_A_211naq   A     HGMERCURY (II) ION Y - 50
1naq_A_211naq   A     MBOMERCURIBENZOIC ACID Y - 50
1nh8_A_1421nh8   A     AMPADENOSINE MONOPHOSPHATE V - 155
1nh8_A_1421nh8   A     AMPADENOSINE MONOPHOSPHATE V - 156
1nnf_A_1751nnf   A     FEFE (III) ION N - 175
1nnf_A_1751nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID N - 175
1nnf_A_1751nnf   A     FEFE (III) ION N - 193
1nnf_A_1751nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID N - 193
1nza_A_121nza   A     GOLGLYCEROL P - 35
1nza_A_121nza   A     GOLGLYCEROL G - 36
1nza_A_121nza   A     GOLGLYCEROL L - 37
1nza_A_121nza   A     GOLGLYCEROL T - 38
1o1x_A_421o1x   A     OCSCYSTEINESULFONIC ACID Y - 42
1o1x_A_421o1x   A     MSESELENOMETHIONINE Y - 42
1o1x_A_421o1x   A     MSESELENOMETHIONINE P - 43
1o1x_A_421o1x   A     MSESELENOMETHIONINE Y - 45
1o1x_A_421o1x   A     MSESELENOMETHIONINE A - 46
1o1x_A_421o1x   A     OCSCYSTEINESULFONIC ACID L - 63
1o1x_A_421o1x   A     MSESELENOMETHIONINE L - 63
1o6z_A_311o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 31
1o6z_A_311o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 32
1o6z_A_311o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 33
1o6z_A_311o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 52
1o7t_A_1751o7t   A     HF5HF OXO CLUSTER HF5 N - 175
1o7t_A_1751o7t   A     HF5HF OXO CLUSTER HF5 S - 176
1o7t_A_1751o7t   A     HF5HF OXO CLUSTER HF5 N - 193
1p99_A_781p99   A     GLYGLYCINE F - 92
1p99_A_781p99   A     METMETHIONINE F - 92
1p99_A_781p99   A     METMETHIONINE Q - 93
1p99_A_781p99   A     METMETHIONINE H - 94
1pb7_A_2061pb7   A     GLYGLYCINE W - 223
1pb7_A_2061pb7   A     GLYGLYCINE D - 224
1ptm_A_931ptm   A     PO4PHOSPHATE ION T - 118
1r9l_A_461r9l   A     BETTRIMETHYL GLYCINE Y - 46
1r9l_A_461r9l   A     BETTRIMETHYL GLYCINE W - 65
1s14_A_10331s14   A     NOVNOVOBIOCIN V - 1039
1s14_A_10331s14   A     NOVNOVOBIOCIN D - 1041
1s14_A_10331s14   A     NOVNOVOBIOCIN N - 1042
1s14_A_10331s14   A     NOVNOVOBIOCIN S - 1043
1s14_A_10331s14   A     NOVNOVOBIOCIN D - 1045
1s14_A_10331s14   A     NOVNOVOBIOCIN E - 1046
1s16_A_10331s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER E - 1038
1s16_A_10331s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 1039
1s16_A_10331s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 1041
1s16_A_10331s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 1042
1s16_A_10331s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER S - 1043
1s16_A_10331s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 1045
1s16_A_10331s16   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER E - 1046
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gud_A_2301gud   A ZN4ZN BINDING SITE FOR CHAIN AE - 237
1o7t_A_1751o7t   A HF1HF5 BINDING SITE FOR CHAIN AN - 175
1o7t_A_1751o7t   A HF1HF5 BINDING SITE FOR CHAIN AN - 193

Clusters included in this Subclass
CLUSTER: HE.4.12
CLUSTER: HE.5.7
CLUSTER: HE.6.6