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Information on SUBCLASS 4.4.2
Subclass Accession number: 5617
Subclass: 4.4.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 19.9 +/- 20.0
Average RMSD (Å) : 0.587 +/- 0.245

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXGXhXXh
(φψ)-conformation: aagababb
Pattern: [adeknqs][aflmy][filmpvy]x[AEGKQST][DGK]x[acfiv]xx[acgimtv]
Conservation:-0.246-0.0470.128-0.6330.5042.717-1.0050.081-0.707-0.562-0.229
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e3i_A_3571e3i   A362372DLMKEGKSIRTHHHHTT--SEEaaaaavababb
1ezi_A_311ezi   A3848AAISSKCFDRIHHHHH---SEEaaaaavababb
1hnj_A_1141hnj   A124134QYVKSGAVKYAHHHHTTS-SEEaaaaavababb
1ht0_A_3551ht0   A360370DLLRSGKSIRTHHHHHT--SEEaaaaavababb
1hzp_A_1141hzp   A124134DMIRGGGAATMHHHHTTS-SEEaaaaavababb
1i1q_A_2421i1q   A254264KAIRAGEIFQVHHHHTTS-SEEaaaaavababb
1i7q_A_2421i7q   A254264EAIRQGEIFQVHHHHHTS-SEEaaaaavababb
1k0g_A_1901k0g   A202212EYLHSGDCYQVHHHHTTS-SEEaaaaavababb
1k6j_A_881k6j   A98108AAKRAGTIQHYHHHHHS--SEEaaaaavaxabb
1kfi_A_3761kfi   A380390NLMDAGLINLCHHHHTTS-SEEaaaaavababb
1m65_A_1101m65   A119129ATIASGNVHIIHHHHTS--SEEaaaaavababx
1o63_A_1351o63   A135145LAPIAGLSDLIHHHHHTS-SEEaaaaavababb
1qdl_A_1571qdl   A169179EYIRSGYIFQVHHHHHTS-SEEaaaaagababb
1rxx_A_2461rxx   A255265SLFAKGAAERVHHHHTTS-SEEaaaaavababb
1sdo_A_1441sdo   A147157AFYVSDKIDVGHHHHTTS-SEEaaaaavababb
1ypr_A_21ypr   A818NLIGTGKVDKAHHHHTSS-SEEaaaaavababb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e3i_A_3571e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE M - 364
1e3i_A_3571e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 369
1e3i_A_3571e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 370
1e3i_A_3571e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 371
1e3i_A_3571e3i   A     ZNZINC ION R - 371
1ezi_A_311ezi   A     MSESELENOMETHIONINE L - 31
1ezi_A_311ezi   A     MSESELENOMETHIONINE H - 34
1ht0_A_3551ht0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 362
1ht0_A_3551ht0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 365
1ht0_A_3551ht0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 367
1ht0_A_3551ht0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 368
1ht0_A_3551ht0   A     ZNZINC ION R - 369
1ht0_A_3551ht0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 369
1hzp_A_1141hzp   A     GOLGLYCEROL K - 141
1i7q_A_2421i7q   A     ILGGLUTAMYL GROUP Q - 258
1i7q_A_2421i7q   A     ILGGLUTAMYL GROUP G - 259
1i7q_A_2421i7q   A     ILGGLUTAMYL GROUP E - 260
1i7q_A_2421i7q   A     ILGGLUTAMYL GROUP F - 262
1i7q_A_2421i7q   A     BEZBENZOIC ACID Q - 263
1o63_A_1351o63   A     MSESELENOMETHIONINE L - 135
1o63_A_1351o63   A     MSESELENOMETHIONINE V - 146
1rxx_A_2461rxx   A     MSESELENOMETHIONINE R - 246
1rxx_A_2461rxx   A     MSESELENOMETHIONINE Q - 247
1rxx_A_2461rxx   A     MSESELENOMETHIONINE I - 249
1rxx_A_2461rxx   A     MSESELENOMETHIONINE G - 250
1rxx_A_2461rxx   A     MSESELENOMETHIONINE Q - 251
1rxx_A_2461rxx   A     MSESELENOMETHIONINE A - 253
1rxx_A_2461rxx   A     MSESELENOMETHIONINE Q - 254
1rxx_A_2461rxx   A     MSESELENOMETHIONINE F - 257
1rxx_A_2461rxx   A     MSESELENOMETHIONINE V - 267
1rxx_A_2461rxx   A     MSESELENOMETHIONINE A - 268
1rxx_A_2461rxx   A     MSESELENOMETHIONINE G - 269

Clusters included in this Subclass
CLUSTER: HE.4.55
CLUSTER: HE.6.39