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Information on SUBCLASS 4.6.2
Subclass Accession number: 5623
Subclass: 4.6.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0016798 (>75 %)  
SCOP : 53589 (>75 %)  53590 (>75 %)  53591 (>75 %)  
 Number of loops: 5

Average sequence ID (%) : 27.3 +/- 29.1
Average RMSD (Å) : 0.420 +/- 0.192

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: XXpPphhp
(φψ)-conformation: aabaaabp
Pattern: [APS][CFLT][act][aiv][AG][IY][lv][iv][DNT][PQ][DKST][GLV][AIMV][HKNT][tv]
Conservation:-0.056-0.915-0.881-0.6800.9421.854-0.656-0.1430.4982.100-0.417-1.037-0.141-0.468-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ezr_A_2421ezr   A242256PCAVAYVIDPTVMTTHHHHHHHH-GGGEEEaaaaaaaabaaabxb
1ga6_A_3121ga6   A314327SFYSAISSTPSLVH.HHHHHHHH-GGGEE.aaaaaaaabaaabx.
1kic_A_2601kic   A262276ALTAAYVVDQKVANVHHHHHHHH-GGG-EEaaaaaaaabaaabxb
1q8f_A_2411q8f   A241255ATCIGYLINPDGIKTHHHHHHHH-GGGEEEaaaaaaaabaaabxb
2mas_A_2422mas   A243257PCAVAYVIDPSVMTTHHHHHHHH-GGGEEEaaaaaaaabaaabxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ga6_A_3121ga6   A     GOLGLYCEROL A - 313
1ga6_A_3121ga6   A     GOLGLYCEROL S - 314
1ga6_A_3121ga6   A     ACTACETATE ION P - 323
1ga6_A_3121ga6   A     ACTACETATE ION S - 324
1ga6_A_3121ga6   A     ACTACETATE ION L - 325
1ga6_A_3121ga6   A     ACTACETATE ION V - 326
1ga6_A_3121ga6   A     ACTACETATE ION H - 327
1kic_A_2601kic   A     NOSINOSINE W - 260
1kic_A_2601kic   A     CACALCIUM ION D - 261
1kic_A_2601kic   A     NOSINOSINE D - 261
2mas_A_2422mas   A     PIR2-(4-AMINO-PHENYL)-5-HYDROXYMETHYL-PYRROLIDINE-3,4-DIOL D - 242
2mas_A_2422mas   A     CACALCIUM ION D - 242
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
2mas_A_2422mas   A S1DESCRIPTION NOT PROVIDEDD - 242

Clusters included in this Subclass
CLUSTER: HE.4.202