ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.9.3

Subclass Accession number: 5640
Subclass: 4.9.3

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 8.8 +/- 10.3
Average RMSD (Å) : 0.860 +/- 0.152

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	pXhXchhX
(φψ)-conformation:	aabplpbb

Pattern:	x	[DSV]	x	x	[EHKR]	[FLTV]	[ILMTV]	[NQRT]	[AKQS]	[fhiv]	x	[epr]	[DGKNQ]	[AILP]	[ipvy]	x	x
Conservation:	-0.737	0.698	-0.191	-1.430	1.853	0.536	1.264	1.285	0.965	-1.092	0.054	0.047	0.245	-0.340	-1.474	-0.964	-0.718

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dp7_P_40	1dp7	P	41	57	ASFGKLIRSVFMGLRTR	HHHHHHHHHHSTT-EEE	aaaaaaaaaabxvxbbb
1psw_A_18	1psw	A	18	34	QSLYRTLQARYPQAIID	HHHHHHHHHHSTT--EE	aaaaaaaaaabxlxbbb
1qde_A_205	1qde	A	205	221	NDVLEVTTKFMRNPVRI	HHHHHHHHHH-SS-EEE	aaaaaaaaaabblxxbb
1sur_*_57	1sur	-	58	74	AVSLHLVNQIRPDIPVI	HHHHHHHHHHSTT-EEE	aaaaaaaaaabpvxpbx
1vec_A_271	1vec	A	271	287	LSVQKFMNSHLEKPYEI	HHHHHHHHHH-SS-EEE	aaaaaaaaaaxblxxxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dp7_P_40	1dp7	P	EDO1,2-ETHANEDIOL	S - 49
1dp7_P_40	1dp7	P	EDO1,2-ETHANEDIOL	V - 50
1dp7_P_40	1dp7	P	EDO1,2-ETHANEDIOL	F - 51
1dp7_P_40	1dp7	P	EDO1,2-ETHANEDIOL	M - 52
1dp7_P_40	1dp7	P	PEGDI(HYDROXYETHYL)ETHER	M - 52
1dp7_P_40	1dp7	P	PEGDI(HYDROXYETHYL)ETHER	G - 53
1dp7_P_40	1dp7	P	PEGDI(HYDROXYETHYL)ETHER	L - 54
1dp7_P_40	1dp7	P	PEGDI(HYDROXYETHYL)ETHER	R - 55
1dp7_P_40	1dp7	P	EDO1,2-ETHANEDIOL	T - 56
1dp7_P_40	1dp7	P	PEGDI(HYDROXYETHYL)ETHER	T - 56
1dp7_P_40	1dp7	P	EDO1,2-ETHANEDIOL	R - 57
1dp7_P_40	1dp7	P	EDO1,2-ETHANEDIOL	R - 58
1psw_A_18	1psw	A	MSESELENOMETHIONINE	Q - 18
1psw_A_18	1psw	A	MSESELENOMETHIONINE	S - 19
1psw_A_18	1psw	A	MSESELENOMETHIONINE	L - 20
1psw_A_18	1psw	A	MSESELENOMETHIONINE	Y - 21
1psw_A_18	1psw	A	MSESELENOMETHIONINE	Y - 28
1psw_A_18	1psw	A	MSESELENOMETHIONINE	P - 29
1psw_A_18	1psw	A	MSESELENOMETHIONINE	Q - 30
1psw_A_18	1psw	A	MSESELENOMETHIONINE	A - 31
1psw_A_18	1psw	A	MSESELENOMETHIONINE	I - 32
1psw_A_18	1psw	A	MSESELENOMETHIONINE	I - 33
1psw_A_18	1psw	A	MSESELENOMETHIONINE	D - 34

Clusters included in this Subclass

CLUSTER: HE.4.195