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Information on SUBCLASS 4.9.4
Subclass Accession number: 5641
Subclass: 4.9.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 12.0 +/- 13.4
Average RMSD (Å) : 0.950 +/- 0.252

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XphpXhhh
(φψ)-conformation: aabplpbb
Pattern: x[DEQS]x[FLV]x[KPT]xxx[KQS]x[EHP][GQ][APV][ACLV][AILV]x[ANV]
Conservation:0.9010.818-1.1780.754-0.8310.244-1.612-0.683-0.3451.220-0.1300.6842.158-0.173-0.1370.471-1.525-0.636
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e5e_A_1661e5e   A166183MERVCKDAHSQEGVLVIAHHHHHHHHHTSTT-EEEEaaaaaaaaaabxvbbxbb
1fjh_A_881fjh   A94111MDAFLPALKKGHQPAAVVHHHHHHHHHTSSS-EEEEaaaaaaaaaaxxlwbbbb
1jqe_A_651jqe   A6885LQILSKVQAQYPGVCINNHHHHHHHHHHSTT-EEEEaaaaaaaaaabpvxxbbb
1lba_*_971lba   -104121RSLLVTLLAKYEGAVLRAHHHHHHHHHHSTT-EEEEaaaaaaaaaabpvxbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e5e_A_1661e5e   A     PPJN-(HYDROXY{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)NORVALINE D - 184
1jqe_A_651jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 65
1jqe_A_651jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 66
1jqe_A_651jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 67
1jqe_A_651jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 88

Clusters included in this Subclass
CLUSTER: HE.4.276
CLUSTER: HE.5.380