Information on SUBCLASS 4.9.4 |
Subclass Accession number: 5641
Subclass: 4.9.4 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 12.0 +/- 13.4 Average RMSD (Å) : 0.950 +/- 0.252 Consensus geometry
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Consensus Sequence: | XphpXhhh |
(φψ)-conformation: | aabplpbb |
Pattern: | x | [DEQS] | x | [FLV] | x | [KPT] | x | x | x | [KQS] | x | [EHP] | [GQ] | [APV] | [ACLV] | [AILV] | x | [ANV] |
Conservation: | 0.901 | 0.818 | -1.178 | 0.754 | -0.831 | 0.244 | -1.612 | -0.683 | -0.345 | 1.220 | -0.130 | 0.684 | 2.158 | -0.173 | -0.137 | 0.471 | -1.525 | -0.636 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e5e_A_166 | 1e5e | A | 166 | 183 | MERVCKDAHSQEGVLVIA | HHHHHHHHHTSTT-EEEE | aaaaaaaaaabxvbbxbb |
1fjh_A_88 | 1fjh | A | 94 | 111 | MDAFLPALKKGHQPAAVV | HHHHHHHHHTSSS-EEEE | aaaaaaaaaaxxlwbbbb |
1jqe_A_65 | 1jqe | A | 68 | 85 | LQILSKVQAQYPGVCINN | HHHHHHHHHHSTT-EEEE | aaaaaaaaaabpvxxbbb |
1lba_*_97 | 1lba | - | 104 | 121 | RSLLVTLLAKYEGAVLRA | HHHHHHHHHHSTT-EEEE | aaaaaaaaaabpvxbxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e5e_A_166 | 1e5e | A | PPJN-(HYDROXY{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)NORVALINE | D - 184 |
1jqe_A_65 | 1jqe | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | E - 65 |
1jqe_A_65 | 1jqe | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | I - 66 |
1jqe_A_65 | 1jqe | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | D - 67 |
1jqe_A_65 | 1jqe | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | V - 88 |
Clusters included in this Subclass |
CLUSTER: HE.4.276 |
CLUSTER: HE.5.380 |