ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.11.6

Subclass Accession number: 5652
Subclass: 4.11.6

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : - (>50 %)  2 (>50 %)  7 (>75 %)
GO : GO:0003899 (>50 %)  GO:0016772 (>50 %)  GO:0016779 (>50 %)
SCOP : 56746 (>50 %)  56747 (>50 %)  56748 (>50 %)

Number of loops: 3

Average sequence ID (%) : 36.1 +/- 36.0
Average RMSD (Å) : 0.467 +/- 0.208

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	pXXXpXXh
(φψ)-conformation:	aapaapbb

Pattern:	[AG]	x	[LV]	[DT]	[NV]	x	[HIL]	[KS]	x	x	[LP]	[R]
Conservation:	0.575	-0.501	0.539	0.312	-0.764	-0.305	-0.829	0.345	-0.501	-0.959	-0.569	2.656

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g71_A_281	1g71	A	281	292	GRVTVDIKRILR	HHHHH-TT-EEE	aaaaaxaapbbp
1uzx_A_28	1uzx	A	37	48	ALLDNFHSLRPR	HHHHH-TTEEEE	aaaaabaabbbb
1v33_A_281	1v33	A	281	292	GRVTVDLKRILR	HHHHH-TT-EEE	aaaaaxaapbbp

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1uzx_A_28	1uzx	A	MSESELENOMETHIONINE	D - 34
1uzx_A_28	1uzx	A	MSESELENOMETHIONINE	L - 38
1uzx_A_28	1uzx	A	MSESELENOMETHIONINE	F - 42
1uzx_A_28	1uzx	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	F - 52
1v33_A_281	1v33	A	PO4PHOSPHATE ION	R - 292

Clusters included in this Subclass

CLUSTER: HE.3.237