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Information on SUBCLASS 4.13.1
Subclass Accession number: 5654
Subclass: 4.13.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 23.9 +/- 22.6
Average RMSD (Å) : 0.633 +/- 0.403

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XhhpXppp
(φψ)-conformation: aapbaaba
Pattern: [aekqr][ILMTV][aekqrt][adegkqr]x[ACIKLMTV][dgknrt][DEGPS][dhknqr][rt]x[AGILV][ILTV]
Conservation:0.1541.091-0.632-1.283-0.925-0.229-0.8760.383-0.1931.787-0.889-0.0901.700
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b9h_A_1161b9h   A118130AVAAAVTPRTKVIHHHHH--TTEEEEaaaaapbaapabb
1bw0_A_1671bw0   A169181EIRRLKDDKTKLLHHHHH--TTEEEEaaaaapbaaxabb
1e5e_A_1391e5e   A139151EVKKHMKPNTKIVHHHHH--TTEEEEaaaaaxbaaxabb
1eg5_A_1291eg5   A131143ELEKLVDEDTFLVHHHHH--TTEEEEaaaaaxbaaxabb
1gc0_A_1401gc0   A142154ALEAAMTPATRVIHHHHH--TTEEEEaaaaaxbaaxabb
1gde_A_1501gde   A152164ELKKYVTDKTRALHHHHH--TTEEEEaaaaaxbaaxabb
1ibj_A_2071ibj   A209221EVAAAIGPQTKLVHHHHH--SSEEEEaaaaaxxaaxabb
1ii2_A_2271ii2   A227239KTTLSADPHRNLIHHHHH--TTSEEEaaaaaxbaabxxa
1j32_A_1531j32   A155167QIRQAITPKTKLLHHHHH--TTEEEEaaaaaxbaaxabb
1mdo_A_1171mdo   A119131HIEAAITPQTKAIHHHHH--TTEEEEaaaaaxbaaxabb
1o4s_A_1521o4s   A154166EVEGLLVGKTKAVHHHHT--TTEEEEaaaaaxbaaxabb
1os1_A_2541os1   A254266KTTLSTDPKRRLIHHHHH--TTSEEEaaaaaxbaabxxa
1ozh_A_3731ozh   A379391AMQDIVNSDVTLTHHHHH--TTEEEEaaaaaxbaabxbb
1p3w_A_1341p3w   A136148ELEAAMRDDTILVHHHHH--TTEEEEaaaaaxbaaxabb
1pmm_A_1911pmm   A193205RMIEACDENTIGVHHHHH--TTEEEEaaaaaxbaaxaeb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bw0_A_1671bw0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 184
1e5e_A_1391e5e   A     PPJN-(HYDROXY{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)NORVALINE Y - 152
1e5e_A_1391e5e   A     PPJN-(HYDROXY{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)NORVALINE E - 154
1eg5_A_1291eg5   A     MSESELENOMETHIONINE L - 142
1eg5_A_1291eg5   A     MSESELENOMETHIONINE S - 144
1gc0_A_1401gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) Y - 155
1gc0_A_1401gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) E - 157
1gde_A_1501gde   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 167
1j32_A_1531j32   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 170
1mdo_A_1171mdo   A     MSESELENOMETHIONINE A - 123
1o4s_A_1521o4s   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 169
1os1_A_2541os1   A     MGMAGNESIUM ION K - 254
1os1_A_2541os1   A     CACALCIUM ION K - 254
1os1_A_2541os1   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 254
1os1_A_2541os1   A     MGMAGNESIUM ION T - 255
1os1_A_2541os1   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 255
1os1_A_2541os1   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 256
1os1_A_2541os1   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 257

Clusters included in this Subclass
CLUSTER: HE.4.53