ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.35.1

Subclass Accession number: 5691
Subclass: 4.35.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 9

Average sequence ID (%) : 47.6 +/- 24.9
Average RMSD (Å) : 0.467 +/- 0.141

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XpXXGSGW
(φψ)-conformation:	aappepeb

Pattern:	[FY]	[ADE]	[DEKNR]	[FM]	[KR]	[AEKQ]	[ekq]	[FL]	[HKNST]	[ADENQT]	[AS]	[AGS]	[agiktv]	[DGKNST]	x	[efq]	[G]	[SV]	[G]	[W]	[AGTV]	[aivw]	[L]	[AGVY]	[krswy]
Conservation:	0.993	-0.072	-0.358	0.571	0.597	-0.472	-0.358	0.540	-0.540	-0.731	0.192	-0.174	-1.008	-0.727	-0.939	-0.902	1.371	-0.188	1.371	3.297	-0.628	-0.695	0.601	-0.826	-0.915

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b06_A_116	1b06	A	116	140	FDRFKQVFSESANSLPGSGWTVLYY	HHHHHHHHHHHHHH--SSEEEEEEE	aaaaaaaaaaaaaapxexebbbbxb
1bsm_A_107	1bsm	A	107	131	FDNMKAQFTAAATGIQGSGWASLVW	HHHHHHHHHHHHH--SSSEEEEEEE	aaaaaaaaaaaaaapxexebbbbbb
1gv3_A_147	1gv3	A	147	171	FEEFKKQFNQAGGDRFGSGWVWLVR	HHHHHHHHHHHHHH--SSEEEEEEE	aaaaaaaaaaaaaaxxexebbbbbb
1ids_A_106	1ids	A	106	130	FDKFRAQFHAAATTVQGSGWAALGW	HHHHHHHHHHHHH--SSSEEEEEEE	aaaaaaaaaaaaaaxbexebbbbbb
1isa_A_103	1isa	A	103	127	FADFKAQFTDAAIKNFGSGWTWLVK	HHHHHHHHHHHHHH--SSEEEEEEE	aaaaaaaaaaaaaaxxexebbbxbb
1my6_A_109	1my6	A	109	133	YDEFKAQFKNAAATQFGSGWAWLVL	HHHHHHHHHHHHHH--SSEEEEEEE	aaaaaaaaaaaaaaxxexebbbbbb
1p7g_A_122	1p7g	A	122	146	FEKFKEEFSQAAKNVEGVGWAILVY	HHHHHHHHHHHHHT-SSSEEEEEEE	aaaaaaaaaaaaaaxxexebbbbbb
1pl4_A_104	1pl4	A	104	128	FDKFKEKLTAASVGVQGSGWGWLGF	HHHHHHHHHHHHHT--SSEEEEEEE	aaaaaaaaaaaaaaxxexebxbxbb
1qnn_A_104	1qnn	A	104	128	FEKFKEEFNTAGTTLFGSGWVWLAS	HHHHHHHHHHHHHHS-SSEEEEEEE	aaaaaaaaaaaaaaxxexebbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1b06_A_116	1b06	A	OF1FERROUS ION, 1 WATER COORDINATED	G - 134
1b06_A_116	1b06	A	OF1FERROUS ION, 1 WATER COORDINATED	W - 135
1bsm_A_107	1bsm	A	FEFE (III) ION	W - 126
1gv3_A_147	1gv3	A	MNMANGANESE (II) ION	W - 166
1ids_A_106	1ids	A	FEFE (III) ION	W - 125
1isa_A_103	1isa	A	FE2FE (II) ION	W - 122
1my6_A_109	1my6	A	FEFE (III) ION	W - 128
1pl4_A_104	1pl4	A	MNMANGANESE (II) ION	W - 123
1qnn_A_104	1qnn	A	FEFE (III) ION	W - 123

Clusters included in this Subclass