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Information on SUBCLASS 4.40.1
Subclass Accession number: 5697
Subclass: 4.40.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 14.3 +/- 14.3
Average RMSD (Å) : 0.633 +/- 0.153

Consensus geometry
d (Å): 13 delta (°): 135-180 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: pXXcXXXh
(φψ)-conformation: aalalpbb
Pattern: [AS]xx[ACL][K][EHY]x[GKR][KN][DGS]x[NTV][CV]x
Conservation:0.760-0.618-0.882-0.1772.6400.439-1.146-0.2650.927-0.089-0.794-0.5300.529-0.794
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a99_A_2451a99   A252265SNRAKEAKNGVNVSHHHHHHHT-S--EEaaaaaaalavxbbb
1j6u_A_1211j6u   A121134AHVLKHLRKSPTVFHHHHHHTT---EEEaaaaaaalalxxbb
1ni4_A_1411ni4   A149162ALACKYNGKDEVCLHHHHHHTT----EEaaaaaaalavbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a99_A_2451a99   A     PUT1,4-DIAMINOBUTANE D - 247
1a99_A_2451a99   A     PUT1,4-DIAMINOBUTANE Q - 250
1j6u_A_1211j6u   A     MSESELENOMETHIONINE A - 121
1j6u_A_1211j6u   A     MSESELENOMETHIONINE H - 122
1j6u_A_1211j6u   A     MSESELENOMETHIONINE V - 123
1j6u_A_1211j6u   A     MSESELENOMETHIONINE L - 124
1j6u_A_1211j6u   A     MSESELENOMETHIONINE K - 125
1j6u_A_1211j6u   A     MSESELENOMETHIONINE V - 133
1ni4_A_1411ni4   A     MSESELENOMETHIONINE P - 143
1ni4_A_1411ni4   A     MSESELENOMETHIONINE L - 144
1ni4_A_1411ni4   A     MSESELENOMETHIONINE I - 148
1ni4_A_1411ni4   A     MSESELENOMETHIONINE Y - 165
1ni4_A_1411ni4   A     TPPTHIAMINE DIPHOSPHATE Y - 165
1ni4_A_1411ni4   A     MGMAGNESIUM ION G - 166
1ni4_A_1411ni4   A     TPPTHIAMINE DIPHOSPHATE G - 166

Clusters included in this Subclass
CLUSTER: HE.5.387