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Information on SUBCLASS 4.48.1
Subclass Accession number: 5706
Subclass: 4.48.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 28.1 +/- 23.4
Average RMSD (Å) : 0.325 +/- 0.150

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXchPXhX
(φψ)-conformation: aalpapbb
Pattern: [LMV][ERW][ILT]x[A]xx[EGN]x[GP][ITV][IV][FTWY][V][AIMV][MTV]
Conservation:0.390-0.762-0.403-0.7831.723-0.972-1.180-0.134-1.3761.0790.0921.372-0.0851.723-0.395-0.290
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bfd_*_4381bfd   -438453LWTAAQYNIPTIFVIMHHHHHHHT---EEEEEaaaaaaalxaxbbbxx
1gpu_A_4501gpu   A453468VRLSALSGHPVIWVATHHHHHHHT---EEEEEaaaaaaavxaxbbxbx
1itz_A_4511itz   A458473MRISALSEAGVIYVMTHHHHHHHT---EEEEEaaaaaaavbaxbxxbx
1upa_A_4731upa   A473488LETIARLNLPIVTVVVHHHHHHHT---EEEEEaaaaaaalxaxbbbxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bfd_*_4381bfd   *     CACALCIUM ION M - 453
1bfd_*_4381bfd   *     TPPTHIAMINE DIPHOSPHATE M - 453
1bfd_*_4381bfd   *     CACALCIUM ION N - 454
1itz_A_4511itz   A     TPPTHIAMINE DIPHOSPHATE Y - 453
1upa_A_4731upa   A     MSESELENOMETHIONINE L - 479
1upa_A_4731upa   A     MSESELENOMETHIONINE L - 481
1upa_A_4731upa   A     MSESELENOMETHIONINE V - 484
1upa_A_4731upa   A     MSESELENOMETHIONINE V - 486
1upa_A_4731upa   A     TPPTHIAMINE DIPHOSPHATE V - 488
1upa_A_4731upa   A     MGMAGNESIUM ION V - 488
1upa_A_4731upa   A     MGMAGNESIUM ION N - 489

Clusters included in this Subclass
CLUSTER: HE.3.190