Information on SUBCLASS 4.48.1 |
Subclass Accession number: 5706
Subclass: 4.48.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 28.1 +/- 23.4 Average RMSD (Å) : 0.325 +/- 0.150 Consensus geometry
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Consensus Sequence: | XXchPXhX |
(φψ)-conformation: | aalpapbb |
Pattern: | [LMV] | [ERW] | [ILT] | x | [A] | x | x | [EGN] | x | [GP] | [ITV] | [IV] | [FTWY] | [V] | [AIMV] | [MTV] |
Conservation: | 0.390 | -0.762 | -0.403 | -0.783 | 1.723 | -0.972 | -1.180 | -0.134 | -1.376 | 1.079 | 0.092 | 1.372 | -0.085 | 1.723 | -0.395 | -0.290 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bfd_*_438 | 1bfd | - | 438 | 453 | LWTAAQYNIPTIFVIM | HHHHHHHT---EEEEE | aaaaaaalxaxbbbxx |
1gpu_A_450 | 1gpu | A | 453 | 468 | VRLSALSGHPVIWVAT | HHHHHHHT---EEEEE | aaaaaaavxaxbbxbx |
1itz_A_451 | 1itz | A | 458 | 473 | MRISALSEAGVIYVMT | HHHHHHHT---EEEEE | aaaaaaavbaxbxxbx |
1upa_A_473 | 1upa | A | 473 | 488 | LETIARLNLPIVTVVV | HHHHHHHT---EEEEE | aaaaaaalxaxbbbxx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bfd_*_438 | 1bfd | * | CACALCIUM ION | M - 453 |
1bfd_*_438 | 1bfd | * | TPPTHIAMINE DIPHOSPHATE | M - 453 |
1bfd_*_438 | 1bfd | * | CACALCIUM ION | N - 454 |
1itz_A_451 | 1itz | A | TPPTHIAMINE DIPHOSPHATE | Y - 453 |
1upa_A_473 | 1upa | A | MSESELENOMETHIONINE | L - 479 |
1upa_A_473 | 1upa | A | MSESELENOMETHIONINE | L - 481 |
1upa_A_473 | 1upa | A | MSESELENOMETHIONINE | V - 484 |
1upa_A_473 | 1upa | A | MSESELENOMETHIONINE | V - 486 |
1upa_A_473 | 1upa | A | TPPTHIAMINE DIPHOSPHATE | V - 488 |
1upa_A_473 | 1upa | A | MGMAGNESIUM ION | V - 488 |
1upa_A_473 | 1upa | A | MGMAGNESIUM ION | N - 489 |
Clusters included in this Subclass |
CLUSTER: HE.3.190 |