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Information on SUBCLASS 5.5.1
Subclass Accession number: 5758
Subclass: 5.5.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 28

Average sequence ID (%) : 18.4 +/- 18.3
Average RMSD (Å) : 0.821 +/- 0.310

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXhXXcpXh
(φψ)-conformation: aapppgpbb
Pattern: x[adeknqrst]x[afiklmtv][adekqrst][adegknqrt][ailmv][deknprst]x[degkqt][adegkns]x[FILMV][filtv]
Conservation:-1.259-0.641-0.795-0.2890.184-0.7381.045-0.226-0.8691.2610.661-0.7702.2720.165
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
16pk_*_11716pk   -117130ADVVSKMSPGDVVLHHHHHT--TT-EEEaaaaaaxbpvxbbb
1ajs_A_1701ajs   A174187LSDLENAPEFSIFVHHHHHHS-TT-EEEaaaaaaxppvpxbx
1bed_*_311bed   -4154AQLKQQLPEGAKFQHHHHHTS-TT-EEEaaaaaaxxpgxbbb
1d7y_A_1321d7y   A136149RRIQAGLRPQSRLLHHHHHH--TT-EEEaaaaaaxxxvxbbb
1e89_A_591e89   A6275LTFLEKLPQGEKVIHHHHHHS-TT--EEaaaaaapppvxbbb
1fsu_*_2111fsu   -220233IALITNHPPEKPLFHHHHHT--TTS-EEaaaaaaxxpvbwbb
1fvk_A_421fvk   A4457DNVKKKLPEGVKMTHHHHTTS-TT--EEaaaaaaxxxvxbbb
1g0o_A_1401g0o   A147160REAYKHLEIGGRLIHHHHHHS-TT-EEEaaaaaaxxxvxbbb
1k7c_A_531k7c   A5568ENIADVVTAGDYVIHHHHHH--TT-EEEaaaaaaxbpvxbbb
1mgt_A_911mgt   A98111EWLTKNVKRGSVITHHHHHHS-TT--EEaaaaaaxxpvbbbx
1nw3_A_2471nw3   A254267KERFANMKEGGRIVHHHHTT--TT-EEEaaaaaaxxpvxbbb
1oaa_*_191oaa   -2639PQLARLLSPGSVMLHHHHTTB-TT-EEEaaaaaaxxpvxbbb
1odo_A_1081odo   A126139VDRLAELPAGEPVDHHHHHHS-TTS-EEaaaaaaxpxvxxbx
1ogc_A_91ogc   A1225AKILADLGHTDKIVHHHHHH--TT-EEEaaaaaapbpvxbbb
1php_*_971php   -100113KAAVDRLNEGDVLLHHHHHT--TT-EEEaaaaaaxbpvxbbb
1q1r_A_1361q1r   A140153ECIRRQLIADNRLVHHHHHT--TT-EEEaaaaaaxbpvxbbb
1qj4_A_591qj4   A6275LTFLEALPPGEKVIHHHHHTS-TT--EEaaaaaaxxpvxbbb
1qnt_A_941qnt   A100113WKLLKVVKFGEVISHHHHHH--TT--EEaaaaaaxxxvbbbx
1qpg_*_1001qpg   -103116EAAVKASAPGSVILHHHHHT--TTEEEEaaaaaaxxpvxbbb
1sfe_*_951sfe   -101114WQALRTIPCGETVSHHHHTTS-TT--EEaaaaaaxxxgbbbx
1v6s_A_941v6s   A97110RREAEALRPGEVLLHHHHHT--TT-EEEaaaaaaxbpvxbbb
1vpe_*_971vpe   -100113KKAVEELKEGEVLLHHHHHT--TTEEEEaaaaaaxxxvbbbb
1yaa_A_1701yaa   A174187LNAIQKAPEGSIFVHHHHHHS-TT-EEEaaaaaaxxpvxxbx
2ay1_A_1702ay1   A174187KADLAAAKKGDMVLHHHHHT--TT-EEEaaaaaaxxxgxbbx
2cmd_*_112cmd   -1831LLLKTQLPSGSELSHHHHHHS-TT-EEEaaaaaapppvxbbb
2cst_A_1702cst   A174187LDDMEKAPEFSIFIHHHHHTS-TT-EEEaaaaaaxxpvpxbx
2pgd_*_782pgd   -8598EKLVPLLDIGDIIIHHHHHH--TT-EEEaaaaaabxxgxbbb
7aat_A_1707aat   A174187MEDISKIPEKSIILHHHHTTS-TT-EEEaaaaaaxppvxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ajs_A_1701ajs   A     PLA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID H - 189
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE T - 212
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE N - 213
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE I - 214
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE T - 216
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE K - 217
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE I - 220
1g0o_A_1401g0o   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 162
1nw3_A_2471nw3   A     SAMS-ADENOSYLMETHIONINE V - 249
1oaa_*_191oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 19
1oaa_*_191oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 20
1oaa_*_191oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 21
1oaa_*_191oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 41
1oaa_*_191oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 42
1qj4_A_591qj4   A     GOLGLYCEROL E - 79
1yaa_A_1701yaa   A     PLPPYRIDOXAL-5'-PHOSPHATE H - 189
2cmd_*_112cmd   *     CITCITRIC ACID I - 12
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e89_A_591e89   A ASAACTIVE SITE A. CATALYTIC RESIDUE SER 80 IS MUTATED TO ALAA - 80

Clusters included in this Subclass
CLUSTER: HE.4.223
CLUSTER: HE.5.75
CLUSTER: HE.5.99
CLUSTER: HE.6.21
CLUSTER: HE.6.284
CLUSTER: HE.6.290
CLUSTER: HE.7.11
CLUSTER: HE.7.50
CLUSTER: HE.8.69
CLUSTER: HE.8.72