Information on SUBCLASS 5.5.2 |
Subclass Accession number: 5759
Subclass: 5.5.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 20.0 +/- 18.6 Average RMSD (Å) : 0.667 +/- 0.207 Consensus geometry
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Consensus Sequence: | pXhXpGpXh |
(φψ)-conformation: | aapppgpbb |
Pattern: | [AL] | [ikmv] | [AENT] | x | [ACILTV] | [HKNS] | x | [AI] | [kpq] | [AENS] | [GK] | [ADEQS] | [iltv] | [ILV] | [LTV] |
Conservation: | 0.300 | -0.790 | -0.167 | -1.516 | -0.559 | 0.277 | -1.307 | 0.462 | -0.505 | 0.220 | 2.196 | -0.082 | -0.551 | 1.775 | 0.246 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ibj_A_157 | 1ibj | A | 161 | 175 | LSAVTHLIKNGEEIV | HHHHHTTS-TT-EEE | aaaaaaaxxpvxbbb |
1ooy_A_7 | 1ooy | A | 7 | 21 | AVEAVKDIPNGATVL | HHHHHTT--TT-EEE | aaaaaaaxxpvxxbx |
1poi_B_9 | 1poi | B | 14 | 28 | AVTIAKQIKNGQVVT | HHHHHTT--TT-EEE | aaaaaaaxxxvxxbx |
1qis_A_170 | 1qis | A | 173 | 187 | LINSLNEAQAGDVVL | HHHHHTT--TT-EEE | aaaaaaaxxxgxxbx |
1rwz_A_195 | 1rwz | A | 198 | 212 | LKEFCKVAGSGDLLT | HHHHGGG--TT-EEE | aaaaaaabbpvxxbb |
7aat_A_170 | 7aat | A | 173 | 187 | AMEDISKIPEKSIIL | HHHHHTTS-TT-EEE | aaaaaaaxppvxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ibj_A_157 | 1ibj | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 157 |
1ibj_A_157 | 1ibj | A | PLPPYRIDOXAL-5'-PHOSPHATE | M - 158 |
1ibj_A_157 | 1ibj | A | PLPPYRIDOXAL-5'-PHOSPHATE | A - 159 |
1ibj_A_157 | 1ibj | A | PLPPYRIDOXAL-5'-PHOSPHATE | L - 161 |
1qis_A_170 | 1qis | A | PLPPYRIDOXAL-5'-PHOSPHATE | H - 189 |
Clusters included in this Subclass |
CLUSTER: HE.6.287 |
CLUSTER: HE.7.98 |
CLUSTER: HE.8.38 |