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Information on SUBCLASS 5.6.1
Subclass Accession number: 5760
Subclass: 5.6.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 16.1 +/- 21.7
Average RMSD (Å) : 0.782 +/- 0.352

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: pXhXpXXhh
(φψ)-conformation: aabaappbb
Pattern: xxx[ACIVY][agrt][EHKQSY][fhmvy]x[DNPRS][DHKNST]x[ehkpt][filpv][ailv]x
Conservation:-0.999-1.4620.3271.205-1.0821.001-0.526-0.6261.5160.8000.777-1.058-0.8891.0060.009
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dlj_A_951dlj   A101115IKEVLSVNSHATLIIHHHHHHH-SS-EEEEaaaaaaabaaxxxbx
1ds6_A_971ds6   A98112FPEVRHHCPSTPIILHHHHHHH-TTS-EEEaaaaaaabaaxpbbx
1esc_*_1491esc   -169183LDRIGYFAPDAKRVLHHHHHHHSTT-EEEEaaaaaaabaaxxbbx
1gk8_I_861gk8   I93107IVACTKAFPDAYVRLHHHHHHH-TTSEEEEaaaaaaabaaxxbbx
1iy8_A_471iy8   A5468KAAVLETAPDAEVLTHHHHHHH-TT--EEEaaaaaaabaaxxbbb
1jd1_A_871jd1   A91105NSVYAKYFNTHKPARHHHHHHHSSSS--EEaaaaaaabaabbwxb
1nul_A_971nul   A97111AVAIREMYPKAHFVTHHHHHHH-TTSEEEEaaaaaaabaaxxxbb
1q7z_A_1511q7z   A158172VLAAREVSRDVFLIAHHHHHHH-SSS-EEEaaaaaaabaaxxbbb
1qd9_A_841qd9   A88102NEVYGQYFDTHKPARHHHHHHHSSS---EEaaaaaaabaaxbwxb
1ryh_A_1161ryh   A117131YPEVRHHCPNTPIILHHHHHHH-SSS-EEEaaaaaaabaaxpbbx
2ngr_A_972ngr   A98112VPEITHHCPKTPFLLHHHHHHH-TT--EEEaaaaaaabaaxwbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dlj_A_951dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE H - 96
1dlj_A_951dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE T - 99
1dlj_A_951dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 100
1dlj_A_951dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE E - 103
1ds6_A_971ds6   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 115
1qd9_A_841qd9   A     HGMERCURY (II) ION F - 84
1qd9_A_841qd9   A     HGMERCURY (II) ION V - 87
1qd9_A_841qd9   A     HGMERCURY (II) ION N - 88
1qd9_A_841qd9   A     HGMERCURY (II) ION R - 102
1qd9_A_841qd9   A     HGMERCURY (II) ION C - 104
1qd9_A_841qd9   A     HGMERCURY (II) ION V - 105
1qd9_A_841qd9   A     HGMERCURY (II) ION E - 106

Clusters included in this Subclass
CLUSTER: HE.3.215
CLUSTER: HE.5.78