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Information on SUBCLASS 5.8.1
Subclass Accession number: 5767
Subclass: 5.8.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 23.8 +/- 20.5
Average RMSD (Å) : 0.660 +/- 0.310

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XphpXGpXh
(φψ)-conformation: aapbpgpbb
Pattern: [adekqt][ekns][aglm][AILV]x[ehkqt][KLM][hkrsty]x[G][ADEQS]x[ACIVW]x
Conservation:-0.451-0.455-0.3440.448-0.695-0.3710.885-0.508-0.4363.0680.393-0.561-0.310-0.664
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bkf_*_571bkf   -6073EEGVAQMSVGQRAKHHHHTT--TT-EEEaaaaaabbxvxbbx
1h2b_A_1691h2b   A178191KKAARTLYPGAYVAHHHHTT--TT-EEEaaaaaaxbxgxbbx
1jvw_A_1211jvw   A124137TEALQLMREGDRWRHHHHTT--TT-EEEaaaaaabbpvxbbx
1l7d_A_2781l7d   A278291EEMVTKMKPGSVIIHHHHTTS-TT-EEEaaaaaaxxpvxbbb
1n1a_A_881n1a   A91104DIAIATMKVGEVCHHHHHTT--TT-EEEaaaaaaxxxvxbbb
1o54_A_431o54   A4356LNEVFEKGPGEIIRHHHHTTS-TT-EEEaaaaaabbxvxxbb
1okg_A_3361okg   A339352QSAATHLHAGEAATHHHHTT-BTT-EEEaaaaaabbpvxbbx
1pbk_*_1731pbk   -176189DEALLTMSKGEKARHHHHTT--TT-EEEaaaaaaxbpgxbbb
1r9h_A_711r9h   A7487DLGVATMTKGEVAEHHHHTT--BT-EEEaaaaaaxbpvxbbb
1say_A_2511say   A251264ASLVEQMRTGSVIVHHHHTTS-TT-EEEaaaaaaxxxvxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bkf_*_571bkf   *     FK58-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN W - 59
1h2b_A_1691h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) A - 169
1h2b_A_1691h2b   A     ZNZINC ION A - 169
1h2b_A_1691h2b   A     OCAOCTANOIC ACID (CAPRYLIC ACID) T - 172
1h2b_A_1691h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) T - 172
1h2b_A_1691h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) V - 193
1okg_A_3361okg   A     MSESELENOMETHIONINE E - 337
1okg_A_3361okg   A     CSSS-MERCAPTOCYSTEINE V - 338
1okg_A_3361okg   A     MSESELENOMETHIONINE S - 340
1okg_A_3361okg   A     MSESELENOMETHIONINE A - 341
1okg_A_3361okg   A     MSESELENOMETHIONINE A - 342
1okg_A_3361okg   A     MSESELENOMETHIONINE H - 344
1okg_A_3361okg   A     MSESELENOMETHIONINE L - 345
1okg_A_3361okg   A     MSESELENOMETHIONINE A - 347
1okg_A_3361okg   A     MSESELENOMETHIONINE E - 349
1okg_A_3361okg   A     MSESELENOMETHIONINE A - 350
1okg_A_3361okg   A     CACALCIUM ION A - 350
1okg_A_3361okg   A     MSESELENOMETHIONINE A - 351
1okg_A_3361okg   A     CACALCIUM ION A - 351
1okg_A_3361okg   A     MSESELENOMETHIONINE T - 352
1okg_A_3361okg   A     CACALCIUM ION T - 352
1okg_A_3361okg   A     MSESELENOMETHIONINE V - 353
1okg_A_3361okg   A     CACALCIUM ION V - 353
1okg_A_3361okg   A     MSESELENOMETHIONINE Y - 354
1okg_A_3361okg   A     CACALCIUM ION Y - 354
1pbk_*_1731pbk   *     RAPRAPAMYCIN IMMUNOSUPPRESSANT DRUG R - 173
1pbk_*_1731pbk   *     RAPRAPAMYCIN IMMUNOSUPPRESSANT DRUG W - 175

Clusters included in this Subclass
CLUSTER: HE.8.8