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Information on SUBCLASS 5.16.1
Subclass Accession number: 5787
Subclass: 5.16.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 15.9 +/- 19.2
Average RMSD (Å) : 0.867 +/- 0.265

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: pXGpXhpXX
(φψ)-conformation: aalbppabb
Pattern: [efkqy]x[AIMVY]x[adnr][deky][el][GR][dkrty]x[ailpvy][DHKNTY]x[anv][ailvwy]
Conservation:-0.294-0.3400.375-0.286-0.347-0.3440.3223.418-0.366-0.666-0.4890.293-0.627-0.170-0.478
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bu6_O_3731bu6   O393407EAMQADSGIRLHALRHHHHHHH----SEEEaaaaaaavbbxabbx
1bup_A_1161bup   A129143EIAEAYLGKTVTNAVHHHHHHHTS---EEEaaaaaaavbxbaxbb
1gqv_A_231gqv   A2842QVINNYQRRCKNQNTHHHHHHHTS--SEEEaaaaaaavbxxabbb
1k1x_A_951k1x   A106120KDYARKLGYDAKGVWHHHHHHTT----EEEaaaaaaavbxpabbx
1l5x_A_701l5x   A7589YLATFGLGRKYDIVLHHHHHHHTS--SEEEaaaaaaavbxxabbb
1qop_B_2071qop   B214228AQILDKEGRLPDAVIHHHHHHHSS--SEEEaaaaaaavbxxabbb
1s3x_A_1161s3x   A129143EIAEAYLGYPVTNAVHHHHHHHSS---EEEaaaaaaavbxxabbb
1s7j_A_1271s7j   A127141PEYEAALGTKIYEAYHHHHHHHTS--SEEEaaaaaaavbxbabbb
1v7c_A_1661v7c   A169183FEVVDELGDAPHYHAHHHHHHHSS--SEEEaaaaaaavbxxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bup_A_1161bup   A     PIHYDROGENPHOSPHATE ION V - 146
1gqv_A_231gqv   A     ACTACETATE ION L - 44
1l5x_A_701l5x   A     MSESELENOMETHIONINE L - 76
1l5x_A_701l5x   A     GOLGLYCEROL L - 76
1l5x_A_701l5x   A     MSESELENOMETHIONINE A - 77
1l5x_A_701l5x   A     GOLGLYCEROL A - 77
1l5x_A_701l5x   A     GOLGLYCEROL T - 78
1l5x_A_701l5x   A     MSESELENOMETHIONINE F - 79
1l5x_A_701l5x   A     MSESELENOMETHIONINE G - 80
1l5x_A_701l5x   A     GOLGLYCEROL G - 80
1l5x_A_701l5x   A     GOLGLYCEROL L - 81
1l5x_A_701l5x   A     GOLGLYCEROL Y - 85
1l5x_A_701l5x   A     MSESELENOMETHIONINE D - 86
1l5x_A_701l5x   A     MSESELENOMETHIONINE I - 92
1qop_B_2071qop   B     PLPPYRIDOXAL-5'-PHOSPHATE C - 230
1v7c_A_1661v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID P - 185
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gqv_A_231gqv   A P-1P-1 PERIPHERAL SUBSITE FOR CHAIN AR - 36
1gqv_A_231gqv   A P1P1 CAYALYTIC SUBSITE FOR CHAIN AK - 38
1gqv_A_231gqv   A P-1P-1 PERIPHERAL SUBSITE FOR CHAIN AN - 39
1gqv_A_231gqv   A P-1P-1 PERIPHERAL SUBSITE FOR CHAIN AQ - 40
1qop_B_2071qop   B PLPPLP BINDING SITE FOR CHAIN BC - 230

Clusters included in this Subclass
CLUSTER: HE.4.104
CLUSTER: HE.5.167