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Information on SUBCLASS 5.17.1
Subclass Accession number: 5789
Subclass: 5.17.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 16.8 +/- 18.0
Average RMSD (Å) : 0.917 +/- 0.343

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XppXhXGhX
(φψ)-conformation: aabpppgbb
Pattern: x[adknqr][almtv]x[aeknqs][dekn][DEHKNPT][mpv][aeps][deg][fikltv]x[afglw]
Conservation:-0.860-0.5400.226-0.838-0.1090.3080.1560.691-0.2692.8290.144-0.862-0.876
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a5t_*_1221a5t   -129141LKTLEEPPAETWFHHHHTS--TTEEEaaaaabpxplbbb
1f60_B_11361f60   B11411153ANVKAIEMEGLTWHHHHT---TTEEEaaaaaxbbpvbbx
1gkz_A_1551gkz   A177188HLALHEDKPDFV.HHHTTS--TTEE.aaaaaxbbxvbb.
1j7d_B_61j7d   B1325QRLLAEPVPGIKAHHHTTS--TTEEEaaaaIbpxxvbbb
1jat_A_61jat   A1325EKLVSDPVPGITAHHHHHS--TTEEEaaaaabpxpvbbb
1lk9_A_1661lk9   A170182EQTKYFDKKGYVWHHHHHS--TTEEEaaaaaxxxxgbbx
1mv8_A_4041mv8   A404416VDLVNKTPSGKKLHHHHHS--TT-EEaaaaabxwxvbbb
1njf_A_1331njf   A140152LKTLEEPPEHVKFHHHHHS--TTEEEaaaaabppxvbbb
1nm2_A_1741nm2   A178190AALNEDKPEGVRKHHHHHS--TTEEEaaaaabxxpvxab
1ofu_A_201ofu   A2840NHMAKNNVEGVEFHHHHHTT--SEEEaaaaaFbbxvbbb
1u9a_A_11u9a   A1426KAWRKDHPFGFVAHHHHHS--TT-EEaaaaabbpxgxbb
2aak_*_42aak   -1426KRLQQDPPAGISGHHHHHS--TTEEEaaaaabxxpvbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gkz_A_1551gkz   A     XEXENON I - 170
1gkz_A_1551gkz   A     XEXENON R - 171
1gkz_A_1551gkz   A     XEXENON A - 174
1lk9_A_1661lk9   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID V - 167
1lk9_A_1661lk9   A     PLPPYRIDOXAL-5'-PHOSPHATE F - 168
1lk9_A_1661lk9   A     FCAALPHA-D-FUCOSE R - 169
1lk9_A_1661lk9   A     FCAALPHA-D-FUCOSE E - 170
1lk9_A_1661lk9   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID E - 170
1lk9_A_1661lk9   A     FCAALPHA-D-FUCOSE Q - 171
1lk9_A_1661lk9   A     FCAALPHA-D-FUCOSE K - 173
1lk9_A_1661lk9   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 174
1lk9_A_1661lk9   A     FCAALPHA-D-FUCOSE Y - 174
1njf_A_1331njf   A     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER A - 155
1ofu_A_201ofu   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 20
1ofu_A_201ofu   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 21
1ofu_A_201ofu   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 22
1ofu_A_201ofu   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 23
1ofu_A_201ofu   A     GDPGUANOSINE-5'-DIPHOSPHATE N - 25
1ofu_A_201ofu   A     GDPGUANOSINE-5'-DIPHOSPHATE A - 26
1ofu_A_201ofu   A     GDPGUANOSINE-5'-DIPHOSPHATE N - 44
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofu_A_201ofu   A AC1GDP BINDING SITE FOR CHAIN AG - 20
1ofu_A_201ofu   A AC1GDP BINDING SITE FOR CHAIN AG - 21
1ofu_A_201ofu   A AC1GDP BINDING SITE FOR CHAIN AG - 22
1ofu_A_201ofu   A AC1GDP BINDING SITE FOR CHAIN AN - 25

Clusters included in this Subclass
CLUSTER: HE.4.161
CLUSTER: HE.5.90
CLUSTER: HE.6.169