Information on SUBCLASS 5.22.1 |
Subclass Accession number: 5795
Subclass: 5.22.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 47.8 +/- 21.6 Average RMSD (Å) : 0.225 +/- 0.050 Consensus geometry
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Consensus Sequence: | XXGphGEXY |
(φψ)-conformation: | aappplpbb |
Pattern: | [TV] | [DEN] | [D] | [H] | [ACS] | [RT] | [AG] | [ILV] | x | [ACLM] | [IV] | [ALV] | [AT] | [EGKT] | [G] | [KR] | [AMV] | [G] | [E] | [IT] | [Y] | x | [I] |
Conservation: | -0.430 | -0.335 | 1.303 | 2.250 | -0.651 | -0.470 | -0.283 | -0.292 | -0.945 | -1.004 | 0.140 | -0.876 | -0.303 | -1.330 | 1.303 | 0.129 | -0.878 | 1.303 | 0.830 | -0.518 | 1.777 | -1.077 | 0.357 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bxk_A_229 | 1bxk | A | 229 | 251 | VEDHARALYCVATTGKVGETYNI | HHHHHHHHHHHHHH--TT-EEEE | aaaaaaaaaaaaaaxxpvxbbxb |
1kew_A_236 | 1kew | A | 236 | 258 | VEDHARALHMVVTEGKAGETYNI | HHHHHHHHHHHHHH--TT-EEEE | aaaaaaaaaaaaaaxxpvxbbxb |
1oc2_A_230 | 1oc2 | A | 230 | 252 | TNDHSTGVWAILTKGRMGETYLI | HHHHHHHHHHHHHH--TT-EEEE | aaaaaaaaaaaaaaxxpvxbbxb |
1r6d_A_220 | 1r6d | A | 220 | 242 | TDDHCRGIALVLAGGRAGEIYHI | HHHHHHHHHHHHHH--TT-EEEE | aaaaaaaaaaaaaaxbpvxbbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bxk_A_229 | 1bxk | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | H - 232 |
1kew_A_236 | 1kew | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | H - 239 |
1kew_A_236 | 1kew | A | GOLGLYCEROL | G - 253 |
1kew_A_236 | 1kew | A | GOLGLYCEROL | E - 254 |
1kew_A_236 | 1kew | A | GOLGLYCEROL | T - 255 |
1kew_A_236 | 1kew | A | GOLGLYCEROL | Y - 256 |
1oc2_A_230 | 1oc2 | A | NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE | H - 233 |
1r6d_A_220 | 1r6d | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | H - 223 |
Clusters included in this Subclass |
CLUSTER: HE.6.166 |