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Information on SUBCLASS 5.25.2
Subclass Accession number: 5802
Subclass: 5.25.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 3.3 +/- 4.8
Average RMSD (Å) : 1.033 +/- 0.153

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XXhcXXpph
(φψ)-conformation: aabpaapbb
Pattern: [DGV]x[AIY][ASV]xx[AMV]xxxx[AQR][GL][GKN]xx[DEN][HKN][IVY][EL]
Conservation:-1.394-1.394-0.4830.064-0.483-0.8470.610-0.118-0.301-0.118-0.3010.428-0.6650.610-0.301-1.2112.4321.7031.3390.428
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f7u_A_4461f7u   A453472VGISAVMIQDMQGKRINNYEHHHHHHHHHHHSS-TT--EEaaaaaaaaaaaabxaaxxbx
1jpz_A_1091jpz   A121140DIAVQLVQKWERLNADEHIEHHHHHHHHHHHT--TT--EEaaaaaaaaaaaaxxaabbbx
1m32_A_651m32   A6584GSYAVEAVLGSALGPQDKVLHHHHHHHHHHHS--TT--EEaaaaaaaaaaaabxaaxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m32_A_651m32   A     MSESELENOMETHIONINE G - 65
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 65
1m32_A_651m32   A     MSESELENOMETHIONINE S - 66
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 66
1m32_A_651m32   A     MSESELENOMETHIONINE Y - 67
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE Y - 67
1m32_A_651m32   A     MSESELENOMETHIONINE A - 68
1m32_A_651m32   A     MSESELENOMETHIONINE V - 69
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 69
1m32_A_651m32   A     MSESELENOMETHIONINE E - 70
1m32_A_651m32   A     MSESELENOMETHIONINE A - 71
1m32_A_651m32   A     MSESELENOMETHIONINE L - 73
1m32_A_651m32   A     MSESELENOMETHIONINE G - 74
1m32_A_651m32   A     MSESELENOMETHIONINE L - 84
1m32_A_651m32   A     MSESELENOMETHIONINE I - 85
1m32_A_651m32   A     MSESELENOMETHIONINE V - 86

Clusters included in this Subclass
CLUSTER: HE.8.111