Information on SUBCLASS 5.25.2 |
Subclass Accession number: 5802
Subclass: 5.25.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 3.3 +/- 4.8 Average RMSD (Å) : 1.033 +/- 0.153 Consensus geometry
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Consensus Sequence: | XXhcXXpph |
(φψ)-conformation: | aabpaapbb |
Pattern: | [DGV] | x | [AIY] | [ASV] | x | x | [AMV] | x | x | x | x | [AQR] | [GL] | [GKN] | x | x | [DEN] | [HKN] | [IVY] | [EL] |
Conservation: | -1.394 | -1.394 | -0.483 | 0.064 | -0.483 | -0.847 | 0.610 | -0.118 | -0.301 | -0.118 | -0.301 | 0.428 | -0.665 | 0.610 | -0.301 | -1.211 | 2.432 | 1.703 | 1.339 | 0.428 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1f7u_A_446 | 1f7u | A | 453 | 472 | VGISAVMIQDMQGKRINNYE | HHHHHHHHHHHSS-TT--EE | aaaaaaaaaaaabxaaxxbx |
1jpz_A_109 | 1jpz | A | 121 | 140 | DIAVQLVQKWERLNADEHIE | HHHHHHHHHHHT--TT--EE | aaaaaaaaaaaaxxaabbbx |
1m32_A_65 | 1m32 | A | 65 | 84 | GSYAVEAVLGSALGPQDKVL | HHHHHHHHHHHS--TT--EE | aaaaaaaaaaaabxaaxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | G - 65 |
1m32_A_65 | 1m32 | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 65 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | S - 66 |
1m32_A_65 | 1m32 | A | PLPPYRIDOXAL-5'-PHOSPHATE | S - 66 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | Y - 67 |
1m32_A_65 | 1m32 | A | PLPPYRIDOXAL-5'-PHOSPHATE | Y - 67 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | A - 68 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | V - 69 |
1m32_A_65 | 1m32 | A | PLPPYRIDOXAL-5'-PHOSPHATE | V - 69 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | E - 70 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | A - 71 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | L - 73 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | G - 74 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | L - 84 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | I - 85 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | V - 86 |
Clusters included in this Subclass |
CLUSTER: HE.8.111 |