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PDB code:

Information on SUBCLASS 6.1.3

Subclass Accession number: 5853 Subclass: 6.1.3 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 23 Average sequence ID (%) : 16.9 +/- 18.5 Average RMSD (Å) : 0.970 +/- 0.196 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aln_*_239	1aln	-	244	259	LILLNLKGYDYPDIQR	HHHHHHTT--GGGEEE	aaaaaaagxbaaaxab
1bu6_O_49	1bu6	O	61	76	VEVLTKADISSDQIAA	HHHHHHHT--GGGEEE	aaaaaaavbxaaaxab
1dbf_A_17	1dbf	A	29	44	EKIIEENHTKPEDVVQ	HHHHHHH---GGGEEE	aaaaaaavxxaaaxab
1dpt_A_70	1dpt	A	82	97	EFLTKELALGQDRILI	HHHHHHHT--GGGEEE	aaaaaaalbxaaabbb
1eg5_A_48	1eg5	A	51	66	EKVAKVLGVSPSEIFF	HHHHHHHTS-GGGEEE	aaaaaaavbxaaabbb
1elu_A_54	1elu	A	69	84	QALAETFNVDPNTITI	HHHHHHTTS-GGGEEE	aaaaaaalbxaaabbx
1ffv_B_566	1ffv	B	587	602	KIAAHMLEVNENDLDW	HHHHHHTTS-GGGEEE	aaaaaaalbxaaabbx
1fnj_A_17	1fnj	A	29	44	EKIIEENHTKPEDVVQ	HHHHHHHT--GGGEEE	aaaaaaalxbaaaxab
1iwe_A_278	1iwe	A	278	293	GGVCTGLGIPPQNIGD	HHHHHHHT--GGGEEE	aaaaaaavbxaaabFx
1jd1_A_49	1jd1	A	61	76	KNVLEASNSSLDRVVK	HHHHHHTT--GGGEEE	aaaaaaavbbaaaxab
1jj2_O_4	1jj2	O	8	23	RLAADVLDVGKNRVWF	HHHHHHTTS-GGGEEE	aaaaaaalbxaaaxbb
1n62_B_576	1n62	B	593	608	MIAAHMLEVHEGDLEW	HHHHHHHTS-GGGEEE	aaaaaaalbxaaabbx
1nq3_A_51	1nq3	A	63	78	GEILKAAGCDFTNVVK	HHHHHTTT--GGGEEE	aaaaaaavbbaaaxab
1p3w_A_42	1p3w	A	56	71	NQIADLVGADPREIVF	HHHHHHHT--GGGEEE	aaaaaaavbxaaaxbx
1pf5_A_49	1pf5	A	61	76	HATLAAAGCTFDDIID	HHHHHTTT--GGGEEE	aaaaaaavbbaaaxab
1qah_A_50	1qah	A	62	77	GEILKAAGCDFTNVVK	HHHHHHTT--GGGEEE	aaaaaaavbbaaaxab
1qd9_A_46	1qd9	A	58	73	KAVLEEAGASFETVVK	HHHHHHTT--GGGEEE	aaaaaaavbbaaaxab
1qlm_A_147	1qlm	A	151	166	EHVADECGVDPENLYL	HHHHHHHTS-GGGEEE	aaaaaaavbxaaabbb
1qu9_A_46	1qu9	A	58	73	KAIVEAAGLKVGDIVK	HHHHHHTT--GGGEEE	aaaaaaavbbaaaxab
1sml_A_60	1sml	A	64	79	LDNMKARGVTPRDLRL	HHHHHHTT--GGGEEE	aaaaaaavbxaaaxab
1szw_A_55	1szw	A	60	75	DALAKFLKIHAREVSF	HHHHHHTT--GGGEEE	aaaaaaalbpaaabbb
1vj5_A_163	1vj5	A	167	182	KFLLDTLKASPSEVVF	HHHHHHHT--GGGEEE	aaaaaaalbxaaabbb
1zrn_*_154	1zrn	-	158	173	ELAEQALGLDRSAILF	HHHHHHHTS-GGGEEE	aaaaaaavbxaaabxx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bu6_O_49	1bu6	O	GOLGLYCEROL	N - 81
1dbf_A_17	1dbf	A	GOLGLYCEROL	L - 21
1dbf_A_17	1dbf	A	GOLGLYCEROL	K - 25
1eg5_A_48	1eg5	A	MSESELENOMETHIONINE	K - 48
1eg5_A_48	1eg5	A	MSESELENOMETHIONINE	A - 49
1eg5_A_48	1eg5	A	MSESELENOMETHIONINE	R - 50
1eg5_A_48	1eg5	A	MSESELENOMETHIONINE	E - 51
1eg5_A_48	1eg5	A	MSESELENOMETHIONINE	K - 52
1eg5_A_48	1eg5	A	MSESELENOMETHIONINE	V - 53
1eg5_A_48	1eg5	A	MSESELENOMETHIONINE	V - 56
1eg5_A_48	1eg5	A	MSESELENOMETHIONINE	L - 57
1eg5_A_48	1eg5	A	MSESELENOMETHIONINE	F - 66
1ffv_B_566	1ffv	B	PCD(MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)	S - 566
1ffv_B_566	1ffv	B	PCD(MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)	T - 567
1ffv_B_566	1ffv	B	PCD(MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)	P - 568
1fnj_A_17	1fnj	A	CEAS-HYDROXY-CYSTEINE	M - 45
1fnj_A_17	1fnj	A	CEAS-HYDROXY-CYSTEINE	L - 46
1fnj_A_17	1fnj	A	CEAS-HYDROXY-CYSTEINE	L - 47
1fnj_A_17	1fnj	A	CEAS-HYDROXY-CYSTEINE	S - 48
1iwe_A_278	1iwe	A	ACTACETATE ION	V - 297
1pf5_A_49	1pf5	A	HGMERCURY (II) ION	A - 67
1pf5_A_49	1pf5	A	HGMERCURY (II) ION	G - 68
1pf5_A_49	1pf5	A	HGMERCURY (II) ION	C - 69
1pf5_A_49	1pf5	A	HGMERCURY (II) ION	T - 70
1pf5_A_49	1pf5	A	HGMERCURY (II) ION	D - 73
1qd9_A_46	1qd9	A	HGMERCURY (II) ION	V - 76
1qd9_A_46	1qd9	A	HGMERCURY (II) ION	I - 78
1qlm_A_147	1qlm	A	PO4PHOSPHATE ION	H - 152
1qlm_A_147	1qlm	A	PO4PHOSPHATE ION	E - 156
1qu9_A_46	1qu9	A	CSPS-PHOSPHOCYSTEINE	T - 74
1qu9_A_46	1qu9	A	CSPS-PHOSPHOCYSTEINE	T - 75
1qu9_A_46	1qu9	A	CSPS-PHOSPHOCYSTEINE	V - 76
1qu9_A_46	1qu9	A	CSPS-PHOSPHOCYSTEINE	F - 77
1qu9_A_46	1qu9	A	CSPS-PHOSPHOCYSTEINE	V - 78
1vj5_A_163	1vj5	A	MGMAGNESIUM ION	D - 184
1vj5_A_163	1vj5	A	PO4PHOSPHATE ION	D - 184

Clusters included in this Subclass

CLUSTER: HE.5.227

CLUSTER: HE.7.4

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