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Information on SUBCLASS 6.2.1
Subclass Accession number: 5855
Subclass: 6.2.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 32

Average sequence ID (%) : 19.9 +/- 20.6
Average RMSD (Å) : 0.831 +/- 0.194

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXGhXXpphX
(φψ)-conformation: aagppaaabb
Pattern: [acfgiltv]xxxxxx[aeknqst][agknq][afiklmv][dehkpqrs]x[dehknqrs][degknqr][filtvy]x
Conservation:-0.540-0.654-0.790-0.809-0.631-0.340-0.944-0.3372.6090.5230.036-0.3860.3791.0031.606-0.722
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a5z_*_1421a5z   -146161TYFFLKESGMDPRKVFHHHHHHHHT--TTTEEaaaaaaaavxxaaabb
1cqx_A_3711cqx   A377392QHDALKNLGIHEARIHHHHHHHHTT--GGGEEaaaaaaaavxxaaabb
1dpt_A_701dpt   A8196FEFLTKELALGQDRILHHHHHHHHT--GGGEEaaaaaaaalbxaaabb
1e9l_A_2431e9l   A246261IISYWKDHGAASEKLIHHHHHHHTT--GGGEEaaaaaaaagxxaaaxb
1eg7_A_10191eg7   A10191034VMELARGLGIQEDEVEHHHHHHTTT--GGGEEaaaaaaaavxxaaabb
1f6d_A_1501f6d   A152167SRQNLLRENVADSRIFHHHHHHHTT--GGGEEaaaaaaaavxxaaabb
1gv0_A_1211gv0   A125140THVAWQKSGLPKERVIHHHHHHHHT--GGGEEaaaaaaaavxwaaabb
1hjx_A_2371hjx   A240255AVGYMLRLGAPASKLVHHHHHHHHT--GGGEEaaaaaaaagxxaaaxb
1hyb_A_521hyb   A5974LTKALSENGIPASRYYHHHHHHHTT--GGGEEaaaaaaaavxpaaabb
1hye_A_1251hye   A129144TYKALVDSKFERNQVFHHHHHHHH---TTSEEaaaaaaaavxxaaabb
1hyh_A_1451hyh   A149164TALFQHVTGFPAHKVIHHHHHHHH---GGGEEaaaaaaaavxwaaabb
1i0z_A_1401i0z   A144159TYVTWKLSGLPKHRVIHHHHHHHH---GGGEEaaaaaaaavxxaaabb
1i10_A_1391i10   A143158TYVAWKISGFPKNRVIHHHHHHHH---GGGEEaaaaaaaavxxaaabb
1itx_A_3141itx   A317332GAQGHLDAGVPAAKLVHHHHHHHHT--GGGEEaaaaaaaagxxaaabb
1jnd_A_2551jnd   A258273QVEYWLSQGFPSNKINHHHHHHHTT--GGGEEaaaaaaaagxxaaabb
1kfw_A_3041kfw   A307322AVKKYLAAGIDPKQLGHHHHHHHTT--GGGEEaaaaaaaavxpaaabb
1ldn_A_1401ldn   A144159TYATWKFSGLPHERVIHHHHHHHHT--GGGEEaaaaaaaavxxaaabx
1lld_A_1271lld   A131146THVAQKLTGLPENQIFHHHHHHHHT--TTSEEaaaaaaaavxwaaabb
1mwm_A_2831mwm   A287302CDAVKKHTQIRDERFFHHHHHHHHT--GGGEEaaaaaaaalxxaaabb
1oap_A_941oap   A108123VKMYLQGKGVSADQISHHHHHHTTT--GGGEEaaaaaaaavxxaaabb
1pze_A_1421pze   A146161VKVMCEASGVPTNMICHHHHHHHH---GGGEEaaaaaaaavxpaaabb
1qzo_A_2161qzo   A219234AVSYMLRLGAPANKLVHHHHHHHHT--GGGEEaaaaaaaagxxaaaxb
1r1m_A_1251r1m   A139154VANNLVSNGVPVSRISHHHHHHHTT--GGGEEaaaaaaaagxpaaabb
1r6t_A_2081r6t   A218233NAKDIIACGFDINKTFHHHHHHTT---TTSEEaaaaaaaagpxaaabb
1spx_A_401spx   A4661TRQQILAAGVSEQNVNHHHHHHHTT--GGGEEaaaaaaaavxxaaabb
1t2d_A_1281t2d   A132147VQLLHQHSGVPKNKIIHHHHHHHH---GGGEEaaaaaaaavxxaaabb
1ur5_A_1221ur5   A126141TYLAAEVSGFPKERVIHHHHHHHH---GGGEEaaaaaaaavxxaaabb
1v4v_A_1551v4v   A157172AKANLLKEGKREEGILHHHHHHTTT--GGGEEaaaaaaaavxxaaabb
3pro_C_1373pro   C140155GVDFVALSGADSAQVRHHHHHHHHT--TTTEEaaaaaaaavxxaaabb
6ldh_*_1406ldh   -144159TYVAWKLSGLPMHRIIHHHHHHHHT--GGGEEaaaaaaaagxpaaabb
8abp_*_2068abp   -212227GVRATEGQGFKAADIIHHHHHHHTT--GGGEEaaaaaaaavxxaaabb
9ldt_A_1429ldt   A146161TYVAWKISGFPKNRVIHHHHHHHH---TTSEEaaaaaaaavxwaaabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a5z_*_1421a5z   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 145
1cqx_A_3711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL I - 371
1cqx_A_3711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL M - 374
1cqx_A_3711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL R - 375
1cqx_A_3711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL Y - 393
1f6d_A_1501f6d   A     MSESELENOMETHIONINE R - 165
1f6d_A_1501f6d   A     MSESELENOMETHIONINE F - 167
1gv0_A_1211gv0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 121
1gv0_A_1211gv0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE M - 142
1hjx_A_2371hjx   A     GOLGLYCEROL D - 238
1hjx_A_2371hjx   A     GOLGLYCEROL Y - 239
1hjx_A_2371hjx   A     GOLGLYCEROL A - 240
1hjx_A_2371hjx   A     GOLGLYCEROL V - 241
1hjx_A_2371hjx   A     GOLGLYCEROL G - 242
1hjx_A_2371hjx   A     GOLGLYCEROL Y - 243
1hjx_A_2371hjx   A     GOLGLYCEROL R - 246
1hjx_A_2371hjx   A     GOLGLYCEROL L - 247
1hye_A_1251hye   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 125
1hyh_A_1451hyh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 145
1i0z_A_1401i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 140
1i10_A_1391i10   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 139
1jnd_A_2551jnd   A     NAGN-ACETYL-D-GLUCOSAMINE F - 257
1jnd_A_2551jnd   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 258
1jnd_A_2551jnd   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 261
1ldn_A_1401ldn   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 140
1lld_A_1271lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 127
1mwm_A_2831mwm   A     ADPADENOSINE-5'-DIPHOSPHATE A - 283
1mwm_A_2831mwm   A     ADPADENOSINE-5'-DIPHOSPHATE E - 284
1mwm_A_2831mwm   A     ADPADENOSINE-5'-DIPHOSPHATE L - 285
1r1m_A_1251r1m   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Y - 137
1r1m_A_1251r1m   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL A - 140
1r1m_A_1251r1m   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 141
1r1m_A_1251r1m   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 144
1r1m_A_1251r1m   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 150
1r1m_A_1251r1m   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL I - 153
1r6t_A_2081r6t   A     MSESELENOMETHIONINE Y - 212
1r6t_A_2081r6t   A     MSESELENOMETHIONINE D - 214
1r6t_A_2081r6t   A     MSESELENOMETHIONINE A - 215
1r6t_A_2081r6t   A     MSESELENOMETHIONINE V - 216
1r6t_A_2081r6t   A     MSESELENOMETHIONINE N - 218
1r6t_A_2081r6t   A     MSESELENOMETHIONINE A - 219
1r6t_A_2081r6t   A     MSESELENOMETHIONINE D - 221
1r6t_A_2081r6t   A     MSESELENOMETHIONINE I - 222
1r6t_A_2081r6t   A     MSESELENOMETHIONINE T - 232
1r6t_A_2081r6t   A     MSESELENOMETHIONINE F - 233
1r6t_A_2081r6t   A     MSESELENOMETHIONINE I - 234
1t2d_A_1281t2d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 128
1t2d_A_1281t2d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 148
1ur5_A_1221ur5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 122
1ur5_A_1221ur5   A     CDCADMIUM ION L - 122
1ur5_A_1221ur5   A     CDCADMIUM ION D - 123
1ur5_A_1221ur5   A     CDCADMIUM ION A - 124
1v4v_A_1551v4v   A     MSESELENOMETHIONINE L - 172
1v4v_A_1551v4v   A     MSESELENOMETHIONINE V - 173
8abp_*_2068abp   *     GLAALPHA D-GALACTOSE I - 231
8abp_*_2068abp   *     GLBBETA-D-GALACTOSE I - 231
9ldt_A_1429ldt   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 142
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gv0_A_1211gv0   A NAANAD BINDING SITE FOR CHAIN AM - 142
1hjx_A_2371hjx   A BC2SO4 BINDING SITE FOR CHAIN BY - 239
1hjx_A_2371hjx   A CC4GOL BINDING SITE FOR CHAIN AG - 242
1hjx_A_2371hjx   A CC4GOL BINDING SITE FOR CHAIN AY - 243
1hjx_A_2371hjx   A CC4GOL BINDING SITE FOR CHAIN AR - 246
1oap_A_941oap   A AC1SO4 BINDING SITE FOR CHAIN AY - 96
1oap_A_941oap   A AC1SO4 BINDING SITE FOR CHAIN AN - 97
1oap_A_941oap   A AC1SO4 BINDING SITE FOR CHAIN AL - 100
1oap_A_941oap   A AC1SO4 BINDING SITE FOR CHAIN AR - 104
1ur5_A_1221ur5   A AC9CL BINDING SITE FOR CHAIN AD - 123
1ur5_A_1221ur5   A AC9CL BINDING SITE FOR CHAIN AA - 124

Clusters included in this Subclass
CLUSTER: HE.5.27
CLUSTER: HE.6.10
CLUSTER: HE.6.81
CLUSTER: HE.7.3
CLUSTER: HE.7.58
CLUSTER: HE.8.26
CLUSTER: HE.8.42