Logo
Information on SUBCLASS 6.2.3
Subclass Accession number: 5857
Subclass: 6.2.3 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 23.8 +/- 22.0
Average RMSD (Å) : 0.542 +/- 0.207

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: pXGhXXpphh
(φψ)-conformation: aagppaaabb
Pattern: [adeks][agiy]x[agikv][dhkpqrs]x[aclmwy][aiklv][dkqrsy]x[GQ][aitv][adps][akrst][DENRS][DHKR][IL][filvwy][ALMTV]
Conservation:-0.634-0.816-0.471-0.577-0.662-0.750-0.822-0.546-0.680-0.7392.7330.0380.345-0.2020.7981.0211.916-0.4280.477
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ad1_A_1391ad1   A148166LAQAHQAKIAGIPSNKIWLHHHHHHHHHTT--GGGEEEaaaaaaaaaagxwaaabxb
1aj2_*_1571aj2   -166184IEQIARCEQAGIAKEKLLLHHHHHHHHHHT--GGGEEEaaaaaaaaaavbxaaaxbb
1d2k_A_2691d2k   A270288DKAVKDYIKAGVPANKIVLHHHHHHHHHTT--GGGEEEaaaaaaaaaagxxaaaxxx
1e9l_A_2431e9l   A244262DSIISYWKDHGAASEKLIVHHHHHHHHHTT--GGGEEEaaaaaaaaaagxxaaaxbx
1fj2_A_811fj2   A92110KALIDQEVKNGIPSNRIILHHHHHHHHHTT--GGGEEEaaaaaaaaaagbxaaabbb
1hjx_A_2371hjx   A238256DYAVGYMLRLGAPASKLVMHHHHHHHHHHT--GGGEEEaaaaaaaaaagxxaaaxbx
1hkk_A_2431hkk   A244262DAAVQQWLQKGTPASKLILHHHHHHHHHTT--GGGEEEaaaaaaaaaagxwaaaxbx
1isp_A_201isp   A2038AGIKSYLVSQGWSRDKLYAHHHHHHHHHTT--GGGEEEaaaaaaaaaagxxaaabbb
1qzo_A_2161qzo   A217235DYAVSYMLRLGAPANKLVMHHHHHHHHHHT--GGGEEEaaaaaaaaaagxxaaaxbx
1rvv_1_241rvv   13250SGAEDALLRHGVDTNDIDVHHHHHHHHHTT--GGGEEEaaaaaaaaaavxxaaabbb
1ryb_A_701ryb   A7290EAIGPLAAYYQVPLRHILLHHHHHHHHHTT--GGGEEEaaaaaaaaaalxxaaaxxb
2rsl_A_132rsl   A1735DIQVRALKDAGVKANRIFTHHHHHHHHHTT--GGGEEEaaaaaaaaaagxpaaaxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aj2_*_1571aj2   *     2PH[7,8-DIHYDRO-PTERIN-6-YL METHANYL]-PHOSPHONOPHOSPHATE D - 185
1hjx_A_2371hjx   A     GOLGLYCEROL D - 238
1hjx_A_2371hjx   A     GOLGLYCEROL Y - 239
1hjx_A_2371hjx   A     GOLGLYCEROL A - 240
1hjx_A_2371hjx   A     GOLGLYCEROL V - 241
1hjx_A_2371hjx   A     GOLGLYCEROL G - 242
1hjx_A_2371hjx   A     GOLGLYCEROL Y - 243
1hjx_A_2371hjx   A     GOLGLYCEROL R - 246
1hjx_A_2371hjx   A     GOLGLYCEROL L - 247
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hjx_A_2371hjx   A BC2SO4 BINDING SITE FOR CHAIN BY - 239
1hjx_A_2371hjx   A CC4GOL BINDING SITE FOR CHAIN AG - 242
1hjx_A_2371hjx   A CC4GOL BINDING SITE FOR CHAIN AY - 243
1hjx_A_2371hjx   A CC4GOL BINDING SITE FOR CHAIN AR - 246

Clusters included in this Subclass
CLUSTER: HE.6.55
CLUSTER: HE.7.14
CLUSTER: HE.8.11