Information on SUBCLASS 6.2.3 |
Subclass Accession number: 5857
Subclass: 6.2.3 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 12 Average sequence ID (%) : 23.8 +/- 22.0 Average RMSD (Å) : 0.542 +/- 0.207 Consensus geometry
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Consensus Sequence: | pXGhXXpphh |
(φψ)-conformation: | aagppaaabb |
Pattern: | [adeks] | [agiy] | x | [agikv] | [dhkpqrs] | x | [aclmwy] | [aiklv] | [dkqrsy] | x | [GQ] | [aitv] | [adps] | [akrst] | [DENRS] | [DHKR] | [IL] | [filvwy] | [ALMTV] |
Conservation: | -0.634 | -0.816 | -0.471 | -0.577 | -0.662 | -0.750 | -0.822 | -0.546 | -0.680 | -0.739 | 2.733 | 0.038 | 0.345 | -0.202 | 0.798 | 1.021 | 1.916 | -0.428 | 0.477 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ad1_A_139 | 1ad1 | A | 148 | 166 | LAQAHQAKIAGIPSNKIWL | HHHHHHHHHTT--GGGEEE | aaaaaaaaaagxwaaabxb |
1aj2_*_157 | 1aj2 | - | 166 | 184 | IEQIARCEQAGIAKEKLLL | HHHHHHHHHHT--GGGEEE | aaaaaaaaaavbxaaaxbb |
1d2k_A_269 | 1d2k | A | 270 | 288 | DKAVKDYIKAGVPANKIVL | HHHHHHHHHTT--GGGEEE | aaaaaaaaaagxxaaaxxx |
1e9l_A_243 | 1e9l | A | 244 | 262 | DSIISYWKDHGAASEKLIV | HHHHHHHHHTT--GGGEEE | aaaaaaaaaagxxaaaxbx |
1fj2_A_81 | 1fj2 | A | 92 | 110 | KALIDQEVKNGIPSNRIIL | HHHHHHHHHTT--GGGEEE | aaaaaaaaaagbxaaabbb |
1hjx_A_237 | 1hjx | A | 238 | 256 | DYAVGYMLRLGAPASKLVM | HHHHHHHHHHT--GGGEEE | aaaaaaaaaagxxaaaxbx |
1hkk_A_243 | 1hkk | A | 244 | 262 | DAAVQQWLQKGTPASKLIL | HHHHHHHHHTT--GGGEEE | aaaaaaaaaagxwaaaxbx |
1isp_A_20 | 1isp | A | 20 | 38 | AGIKSYLVSQGWSRDKLYA | HHHHHHHHHTT--GGGEEE | aaaaaaaaaagxxaaabbb |
1qzo_A_216 | 1qzo | A | 217 | 235 | DYAVSYMLRLGAPANKLVM | HHHHHHHHHHT--GGGEEE | aaaaaaaaaagxxaaaxbx |
1rvv_1_24 | 1rvv | 1 | 32 | 50 | SGAEDALLRHGVDTNDIDV | HHHHHHHHHTT--GGGEEE | aaaaaaaaaavxxaaabbb |
1ryb_A_70 | 1ryb | A | 72 | 90 | EAIGPLAAYYQVPLRHILL | HHHHHHHHHTT--GGGEEE | aaaaaaaaaalxxaaaxxb |
2rsl_A_13 | 2rsl | A | 17 | 35 | DIQVRALKDAGVKANRIFT | HHHHHHHHHTT--GGGEEE | aaaaaaaaaagxpaaaxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1aj2_*_157 | 1aj2 | * | 2PH[7,8-DIHYDRO-PTERIN-6-YL METHANYL]-PHOSPHONOPHOSPHATE | D - 185 |
1hjx_A_237 | 1hjx | A | GOLGLYCEROL | D - 238 |
1hjx_A_237 | 1hjx | A | GOLGLYCEROL | Y - 239 |
1hjx_A_237 | 1hjx | A | GOLGLYCEROL | A - 240 |
1hjx_A_237 | 1hjx | A | GOLGLYCEROL | V - 241 |
1hjx_A_237 | 1hjx | A | GOLGLYCEROL | G - 242 |
1hjx_A_237 | 1hjx | A | GOLGLYCEROL | Y - 243 |
1hjx_A_237 | 1hjx | A | GOLGLYCEROL | R - 246 |
1hjx_A_237 | 1hjx | A | GOLGLYCEROL | L - 247 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1hjx_A_237 | 1hjx | A | BC2SO4 BINDING SITE FOR CHAIN B | Y - 239 |
1hjx_A_237 | 1hjx | A | CC4GOL BINDING SITE FOR CHAIN A | G - 242 |
1hjx_A_237 | 1hjx | A | CC4GOL BINDING SITE FOR CHAIN A | Y - 243 |
1hjx_A_237 | 1hjx | A | CC4GOL BINDING SITE FOR CHAIN A | R - 246 |
Clusters included in this Subclass |
CLUSTER: HE.6.55 |
CLUSTER: HE.7.14 |
CLUSTER: HE.8.11 |