ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.2.8

Subclass Accession number: 5862
Subclass: 6.2.8

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : - (>50 %)  1 (>50 %)  3 (>50 %)  5 (>50 %)
GO : GO:0003677 (>50 %)
SCOP : 52466 (>50 %)  52467 (>50 %)  63984 (>50 %)

Number of loops: 3

Average sequence ID (%) : 28.6 +/- 19.4
Average RMSD (Å) : 0.400 +/- 0.173

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XAGhXXpXhh
(φψ)-conformation:	aagppaaabb

Pattern:	[AL]	[EL]	x	x	[A]	[G]	[FLV]	[EKP]	[DPQ]	[DE]	x	[IL]	[AIV]	[EL]
Conservation:	-0.282	-0.631	-0.340	-1.078	1.171	2.398	-0.328	-0.260	-0.328	1.181	-1.283	0.603	-0.192	-0.631

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1j8f_A_172	1j8f	A	172	185	LERIAGLEQEDLVE	HHHHTT--GGGEEE	aaaaagxxaaabbx
1ky8_A_198	1ky8	A	206	219	ALLDAGFPPDAIAL	HHHHHT--TTSEEE	aaaaagppaaabbb
1q1a_A_120	1q1a	A	120	133	LERQAGVKDDLIIE	HHHHTT--GGGEEE	aaaaagxxaaabbx

Clusters included in this Subclass

CLUSTER: HE.6.336