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PDB code:

Information on SUBCLASS 6.5.1

Subclass Accession number: 5865 Subclass: 6.5.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 20 Average sequence ID (%) : 16.0 +/- 25.0 Average RMSD (Å) : 0.940 +/- 0.282 Consensus geometry d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1afw_A_100	1afw	A	102	120	EHRAACLASGIPYSTPFVA	HHHHHHHHTT--TTS-EEE	aaaaaaaaagxwaaxxbbb
1bjn_A_44	1bjn	A	53	71	AEKDFRDLLNVPSNYKVLF	HHHHHHHHHT--TTEEEEE	aaaaaaaaalxpaabbbbb
1cbf_*_189	1cbf	-	191	209	KVMKEFINAGWSEDTPVVV	HHHHHHHHTT--TT-EEEE	aaaaaaaaagxpaappbbb
1cmx_A_15	1cmx	A	17	35	VFTNFAHKLGLKNEWAYFD	HHHHHHHHHTB-TTEEEEE	aaaaaaaaaNppaabbxbx
1d0n_A_331	1d0n	A	334	352	TASDFISKMDYPKQTQVSV	HHHHHHHHTT--TT-EEEE	aaaaaaaaalbxaapxbbb
1eo6_A_57	1eo6	A	60	78	FMWIIRKRIQLPSEKAIFL	HHHHHHHHHT--TTS--EE	aaaaaaaaalxwaaxxbbb
1gnu_A_57	1gnu	A	60	78	FYFLIRKRIHLRAEDALFF	HHHHHHHHTT--TTS--EE	aaaaaaaaavbxaabxbbx
1hsb_A_57	1hsb	A	77	95	DLGTLRGYYNQSEAGSHTI	HHHHHHHHTT--TTS--EE	aaaaaaaaalbxaaxxbbb
1j72_A_302	1j72	A	311	329	VAEGFISRMQYAPNTQVEI	HHHHHHHHHT--TT-EEEE	aaaaaaaaalxpaaxxbxx
1k5n_A_57	1k5n	A	77	95	DLRTLLRYYNQSEAGSHTL	HHHHHHHHTT--SSS--EE	aaaaaaaaalbxaaxxbbb
1l8b_A_173	1l8b	A	179	197	IGRVYKERLGLPPKIVIGY	HHHHHHHHHT--TTS--EE	aaaaaaaaavxpaaxxbbb
1ld9_A_58	1ld9	A	77	95	NLRTLLGYYNQSAGGTHTL	HHHHHHHHTT--SSS--EE	aaaaaaaaalbxaabxbbb
1lk2_A_57	1lk2	A	77	95	DLRTLLGYYNQSKGGSHTI	HHHHHHHHTT--TTS--EE	aaaaaaaaalbxaabxbbb
1m6o_A_57	1m6o	A	77	95	NLRTALRYYNQSEAGSHII	HHHHHHHHTT--TTS--EE	aaaaaaaaalbxaaxxbbb
1mhc_A_58	1mhc	A	77	95	NLRTLLRYYNQSEGGSHIL	HHHHHHHHTT--TT---EE	aaaaaaaaalxxaaxbbbb
1mzj_A_261	1mzj	A	263	279	IIDVLVDRLGVPEHVVV..	HHHHHHHHHT--TTSEE..	aaaaaaaaavxwaaxxb..
1qlv_A_145	1qlv	A	145	163	ADYQLVKLLGLSPSVKRYM	HHHHHHHHHT--TT-EEEE	aaaaaaaaavxxaaxxbbx
1qo3_A_57	1qo3	A	77	95	DLRTALRYYNQSAGGSHTL	HHHHHHHHTT--TTS--EE	aaaaaaaaalxxaaxxbbb
1uch_*_13	1uch	-	15	33	VTNQFLKQLGLHPNWQFVD	HHHHHHHHTTB-TTEEEEE	aaaaaaaaagxxaabbxbx
1vic_A_75	1vic	A	78	96	RLAEVVEKLAIPDNEIIVN	HHHHHHHHTT--TT-EEEE	aaaaaaaaalxwaaxxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1afw_A_100	1afw	A	MPD2-METHYL-2,4-PENTANEDIOL	T - 101
1cbf_*_189	1cbf	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	V - 210
1cbf_*_189	1cbf	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	Y - 211
1gnu_A_57	1gnu	A	NINICKEL (II) ION	K - 66
1gnu_A_57	1gnu	A	NINICKEL (II) ION	R - 67
1gnu_A_57	1gnu	A	NINICKEL (II) ION	H - 69
1lk2_A_57	1lk2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 86
1mzj_A_261	1mzj	A	COACOENZYME A	R - 262
1mzj_A_261	1mzj	A	COACOENZYME A	I - 263
1qo3_A_57	1qo3	A	EDO1,2-ETHANEDIOL	W - 97

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gnu_A_57	1gnu	A	NINI BINDING SITE FOR CHAIN A	H - 69

Clusters included in this Subclass

CLUSTER: HE.6.52

CLUSTER: HE.7.96

CLUSTER: HE.8.5

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