ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.45.1

Subclass Accession number: 5910
Subclass: 6.45.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0003677 (>75 %) GO:0003700 (>75 %) GO:0003707 (>75 %) GO:0004872 (>75 %) GO:0004879 (>75 %)
SCOP : 48507 (>75 %) 48508 (>75 %) 48509 (>75 %)

Number of loops: 3

Average sequence ID (%) : 54.2 +/- 11.3
Average RMSD (Å) : 0.867 +/- 0.379

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	hRpcPXpcpL
(φψ)-conformation:	aapbaaalbb

Pattern:	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x
Conservation:	-0.755	-0.925	1.966	1.286	-1.435	-0.074	0.606	-0.415	-0.074	-0.415	0.096	-0.244	0.096	1.286	-0.074	-0.244	-1.435	0.606	1.286	-1.095	0.606	-0.585	1.286	-0.925	0.266	2.647	-1.265	-0.585	-0.415	-0.755	0.606	-0.925

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1nav_A_244	1nav	A	244	275	CEDQIILLKGCCMEIMSLRAAVRYDPESDTLT	HHHHHHHHHHHHHHHHHHHHHHT-BTTTTEEE	aaaaaaaaaaaaaaaaaaaaaaaxbaaalbbb
1ovl_A_432	1ovl	A	432	463	KADQDLLFESAFLELFVLRLAYRSNPVEGKLI	HHHHHHHHHHHHHHHHHHHHHHHSBTTTTEEE	aaaaaaaaaaaaaaaaaaaaaaaxbaaavxbb
1ovl_E_432	1ovl	E	432	463	KADQDLLFESAFLELFVLRLAYRSNPVEGKLI	HHHHHHHHHHHHHHHHHHHHHHHSBGGGTEEE	aaaaaaaaaaaaaaaaaaaaaaaxbaaavxxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1nav_A_244	1nav	A	IH5[4-(4-HYDROXY-3-ISOPROPYLPHENOXY)-3,5-DIMETHYLPHENYL] ACETIC ACID	M - 256
1nav_A_244	1nav	A	IH5[4-(4-HYDROXY-3-ISOPROPYLPHENOXY)-3,5-DIMETHYLPHENYL] ACETIC ACID	I - 258
1nav_A_244	1nav	A	IH5[4-(4-HYDROXY-3-ISOPROPYLPHENOXY)-3,5-DIMETHYLPHENYL] ACETIC ACID	M - 259
1nav_A_244	1nav	A	IH5[4-(4-HYDROXY-3-ISOPROPYLPHENOXY)-3,5-DIMETHYLPHENYL] ACETIC ACID	S - 260
1nav_A_244	1nav	A	IH5[4-(4-HYDROXY-3-ISOPROPYLPHENOXY)-3,5-DIMETHYLPHENYL] ACETIC ACID	R - 262
1nav_A_244	1nav	A	IH5[4-(4-HYDROXY-3-ISOPROPYLPHENOXY)-3,5-DIMETHYLPHENYL] ACETIC ACID	A - 263
1nav_A_244	1nav	A	IH5[4-(4-HYDROXY-3-ISOPROPYLPHENOXY)-3,5-DIMETHYLPHENYL] ACETIC ACID	R - 266
1nav_A_244	1nav	A	IH5[4-(4-HYDROXY-3-ISOPROPYLPHENOXY)-3,5-DIMETHYLPHENYL] ACETIC ACID	T - 275
1nav_A_244	1nav	A	IH5[4-(4-HYDROXY-3-ISOPROPYLPHENOXY)-3,5-DIMETHYLPHENYL] ACETIC ACID	L - 276
1ovl_A_432	1ovl	A	MSESELENOMETHIONINE	Q - 435
1ovl_A_432	1ovl	A	MSESELENOMETHIONINE	L - 438
1ovl_A_432	1ovl	A	MSESELENOMETHIONINE	F - 439
1ovl_A_432	1ovl	A	MSESELENOMETHIONINE	A - 442
1ovl_E_432	1ovl	E	MSESELENOMETHIONINE	F - 443
1ovl_A_432	1ovl	A	MSESELENOMETHIONINE	L - 446

Clusters included in this Subclass