Information on SUBCLASS 6.54.1 |
Subclass Accession number: 5919
Subclass: 6.54.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 22.2 +/- 19.4 Average RMSD (Å) : 0.367 +/- 0.058 Consensus geometry
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Consensus Sequence: | XXGpXhpphX |
(φψ)-conformation: | aaeaaaaapb |
Pattern: | x | [MQR] | [ELM] | x | x | [G] | [DS] | x | [AIM] | [DES] | [NQ] | [IV] | x | [AF] | [AKV] |
Conservation: | -0.595 | -0.261 | -0.818 | -0.311 | 0.023 | 2.846 | 0.673 | -0.818 | -0.579 | 0.058 | 0.568 | 1.078 | -0.978 | 0.012 | -0.898 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1jr2_A_198 | 1jr2 | A | 208 | 222 | IQELSGDNIDQIKFA | HHHHHGGGGGGSEEE | aaaaaeaaaaaxxxb |
1mus_A_164 | 1mus | A | 172 | 186 | SRLRMGSMMSNVIAV | HHHHHGGGGGGEEEE | aaaaaeaaaaaxbxb |
3thi_A_242 | 3thi | A | 242 | 256 | SMMRMGDYAEQVRFK | HHHHHGGGGGTEEEE | aaaaaeaaaaaxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1mus_A_164 | 1mus | A | EGLETHYLENE GLYCOL | K - 164 |
1mus_A_164 | 1mus | A | MNMANGANESE (II) ION | W - 165 |
1mus_A_164 | 1mus | A | EGLETHYLENE GLYCOL | W - 165 |
1mus_A_164 | 1mus | A | EGLETHYLENE GLYCOL | A - 167 |
1mus_A_164 | 1mus | A | MGMAGNESIUM ION | S - 178 |
1mus_A_164 | 1mus | A | MGMAGNESIUM ION | M - 179 |
1mus_A_164 | 1mus | A | MGMAGNESIUM ION | M - 180 |
1mus_A_164 | 1mus | A | MGMAGNESIUM ION | S - 181 |
1mus_A_164 | 1mus | A | MGMAGNESIUM ION | N - 182 |
Clusters included in this Subclass |
CLUSTER: HE.6.202 |