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Information on SUBCLASS 6.54.1
Subclass Accession number: 5919
Subclass: 6.54.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 22.2 +/- 19.4
Average RMSD (Å) : 0.367 +/- 0.058

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXGpXhpphX
(φψ)-conformation: aaeaaaaapb
Pattern: x[MQR][ELM]xx[G][DS]x[AIM][DES][NQ][IV]x[AF][AKV]
Conservation:-0.595-0.261-0.818-0.3110.0232.8460.673-0.818-0.5790.0580.5681.078-0.9780.012-0.898
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1jr2_A_1981jr2   A208222IQELSGDNIDQIKFAHHHHHGGGGGGSEEEaaaaaeaaaaaxxxb
1mus_A_1641mus   A172186SRLRMGSMMSNVIAVHHHHHGGGGGGEEEEaaaaaeaaaaaxbxb
3thi_A_2423thi   A242256SMMRMGDYAEQVRFKHHHHHGGGGGTEEEEaaaaaeaaaaaxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1mus_A_1641mus   A     EGLETHYLENE GLYCOL K - 164
1mus_A_1641mus   A     MNMANGANESE (II) ION W - 165
1mus_A_1641mus   A     EGLETHYLENE GLYCOL W - 165
1mus_A_1641mus   A     EGLETHYLENE GLYCOL A - 167
1mus_A_1641mus   A     MGMAGNESIUM ION S - 178
1mus_A_1641mus   A     MGMAGNESIUM ION M - 179
1mus_A_1641mus   A     MGMAGNESIUM ION M - 180
1mus_A_1641mus   A     MGMAGNESIUM ION S - 181
1mus_A_1641mus   A     MGMAGNESIUM ION N - 182

Clusters included in this Subclass
CLUSTER: HE.6.202