Logo
Information on SUBCLASS 8.1.1
Subclass Accession number: 5964
Subclass: 8.1.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 24.5 +/- 21.3
Average RMSD (Å) : 0.627 +/- 0.505

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XhGhpXXphphh
(φψ)-conformation: aalbpaaapabb
Pattern: [afgikltv]x[aipv][acgilmtv]x[ekrw][atv][ILMT][ADEKRS][adeknr][anst][GKN][ILVW][adekqrst]x[ADEGQS][dekq][CILV][dgnrst]x[FILV]x
Conservation:-0.968-1.1800.048-0.621-1.259-0.1580.5471.3130.192-0.9860.2552.2671.002-0.498-0.434-0.0660.8351.436-0.660-1.6380.977-0.400
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1afw_A_3181afw   A320341AYAIPKVLEATGLQVQDIDIFEHHHHHHHHHHHT--GGG-SEEEaaaaaaaaaaavbbaaaxabbb
1bup_A_3141bup   A314335LDPVEKALRDAKLDKSQIHDIVHHHHHHHHHHHT--GGG--EEEaaaaaaaaaaalbxaaaxabbb
1e5m_A_2811e5m   A284305TRAIAWALKDSGLKPEMVSYINHHHHHHHHHHHT--GGG--EEEaaaaaaaaaaavbxaaaxabbx
1gz3_A_1781gz3   A181202VGKLCLYTACAGIRPDQCLPVCHHHHHHHHHHH---GGGEEEEEaaaaaaaaaaavxpaaabbwbb
1hnj_A_2091hnj   A221242AHIVDETLAANNLDRSQLDWLVHHHHHHHHHHTT--GGG--EEEaaaaaaaaaaalbbaaaxabbb
1hnj_A_511hnj   A5677FEAATRAIEMAGIEKDQIGLIVHHHHHHHHHHHT--GGG--EEEaaaaaaaaaaavbxaaaxabbb
1hzp_A_2091hzp   A221242GDVGRRAMDAAGVRPDQIDVFVHHHHHHHHHHTT--GGG--EEEaaaaaaaaaaavbxaaaxabbb
1hzp_A_511hzp   A5677TEACRRALSNAGLSAADIDGVIHHHHHHHHHHTT--GGG--EEEaaaaaaaaaaavbbaaaxabbb
1j3n_A_2751j3n   A278299ALAMARALKDAGIAPEQVGYINHHHHHHHHHHHT--GGG--EEEaaaaaaaaaaavbxaaaxabbx
1m3k_A_271m3k   A3253ATVISAVLERAGVAAGEVNEVIHHHHHHHHHHHT--GGG--EEEaaaaaaaaaaavbxaaaxabbb
1m3k_A_2921m3k   A293314IPASRKALERAGWKIGDLDLVEHHHHHHHHHHHT--GGG-SEEEaaaaaaaaaaavbxaaaxabbb
1mzj_A_601mzj   A6586VAASRRALEHAGVDPAEIDLVVHHHHHHHHHHHT--GGG--EEEaaaaaaaaaaavbxaaaxabbb
1qlv_A_961qlv   A112133KEAAVKAIDEWGLPKSKITHLIHHHHHHHHHHH-S-GGG--EEEaaaaaaaaaaavxxaaaxabbb
1s3x_A_3141s3x   A314335LEPVEKALRDAKLDKAQIHDLVHHHHHHHHHHTT--GGG--EEEaaaaaaaaaaalbbaaaxabbb
1ub7_A_2111ub7   A223244NTATLEAIEKAGLTPEDIRLFVHHHHHHHHHHHT--GGG-SEEEaaaaaaaaaaavbbaaaxabxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bup_A_3141bup   A     MGMAGNESIUM ION V - 337
1gz3_A_1781gz3   A     MNMANGANESE (II) ION I - 179
1gz3_A_1781gz3   A     OXLOXALATE ION K - 183
1gz3_A_1781gz3   A     MNMANGANESE (II) ION K - 183
1hnj_A_2091hnj   A     MLCMALONYL-COENZYME A G - 209
1hnj_A_2091hnj   A     MLCMALONYL-COENZYME A N - 210
1hnj_A_2091hnj   A     MLCMALONYL-COENZYME A E - 211
1hnj_A_2091hnj   A     MLCMALONYL-COENZYME A V - 212
1hnj_A_2091hnj   A     MLCMALONYL-COENZYME A F - 213
1hnj_A_2091hnj   A     MLCMALONYL-COENZYME A A - 216
1hzp_A_511hzp   A     GOLGLYCEROL S - 53
1hzp_A_511hzp   A     GOLGLYCEROL R - 61
1hzp_A_2091hzp   A     DAOLAURIC ACID G - 209
1hzp_A_2091hzp   A     DAOLAURIC ACID P - 210
1hzp_A_2091hzp   A     DAOLAURIC ACID V - 212
1hzp_A_2091hzp   A     DAOLAURIC ACID F - 213
1hzp_A_2091hzp   A     GOLGLYCEROL D - 222
1hzp_A_2091hzp   A     GOLGLYCEROL R - 225
1hzp_A_2091hzp   A     GOLGLYCEROL R - 226
1hzp_A_2091hzp   A     GOLGLYCEROL D - 229
1m3k_A_2921m3k   A     SULSULFATE ANION K - 298
1m3k_A_2921m3k   A     SULSULFATE ANION E - 301
1m3k_A_2921m3k   A     SULSULFATE ANION R - 302
1s3x_A_3141s3x   A     CACALCIUM ION V - 337
1s3x_A_3141s3x   A     ADPADENOSINE-5'-DIPHOSPHATE V - 337
1ub7_A_2111ub7   A     GOLGLYCEROL E - 228
1ub7_A_2111ub7   A     GOLGLYCEROL K - 232
1ub7_A_2111ub7   A     GOLGLYCEROL R - 241

Clusters included in this Subclass
CLUSTER: HE.7.30
CLUSTER: HE.9.1