ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 12.1.1

Subclass Accession number: 6010
Subclass: 12.1.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : - (>75 %)  1.14 (>75 %)  1.14.13 (>75 %)  1.14.13.39 (>75 %)  22 (>75 %)  3 (>75 %)  4 (>75 %)
GO : GO:0004175 (>75 %)  GO:0004197 (>75 %)  GO:0004497 (>75 %)  GO:0004517 (>75 %)  GO:0005489 (>75 %)  GO:0005515 (>75 %)  GO:0005516 (>75 %)  GO:0008233 (>75 %)  GO:0008234 (>75 %)  GO:0010181 (>75 %)  GO:0016705 (>75 %)  GO:0016709 (>75 %)  GO:0048037 (>75 %)  GO:0050662 (>75 %)
SCOP : 52128 (>75 %)  52129 (>75 %)  52130 (>75 %)  56511 (>75 %)  56512 (>75 %)  56513 (>75 %)

Number of loops: 4

Average sequence ID (%) : 46.2 +/- 20.4
Average RMSD (Å) : 0.425 +/- 0.126

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XFpcXpXXpLXXKPKh
(φψ)-conformation:	aapaaabaaaplbwbb

Pattern:	[ILV]	[EKQY]	[DEK]	[ILV]	[FTV]	[ANQS]	x	[F]	[DNRT]	[GN]	x	[KNRS]	[CS]	[KP]	[ST]	[L]	x	[EGN]	[K]	[P]	[K]	[LMV]	[F]	[F]	[I]	[Q]
Conservation:	-0.129	-0.879	-0.318	-0.211	-0.959	-0.971	-1.400	1.450	-1.001	0.136	-1.461	-0.756	0.476	0.093	-0.129	0.469	-1.522	-0.754	0.960	1.940	0.960	-0.325	1.450	1.450	0.469	0.960

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f1j_A_159	1f1j	A	159	184	IKDLTAHFRGDRSKTLLEKPKLFFIQ	HHHHHHTTSTTT-GGGTTS-EEEEEE	aaaaaaaapaaabaaaxvbwbbbbbb
1nw9_B_260	1nw9	B	260	285	VEKIVNIFNGTSCPSLGGKPKLFFIQ	HHHHHHTT-TTT-GGGTTS-EEEEEE	aaaaaaaaxaaabaaaxvbwbxbbbb
1pyo_A_128	1pyo	A	128	153	LQEVFQLFDNANCPSLQNKPKMFFIQ	HHHHHHHTSTTT-GGGTTS-EEEEEE	aaaaaaaaxaaabaaapvbwbbbbbb
1qtn_A_333	1qtn	A	333	358	IYELTSQFTGLKCPSLAGKPKVFFIQ	HHHHHGGGSTTT-GGGTTS-EEEEEE	aaaaaaaaxaaabaaaxvbwbbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass