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Information on SUBCLASS 2.2.13
Subclass Accession number: 6058
Subclass: 2.2.13 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 9.2 +/- 12.3
Average RMSD (Å) : 0.611 +/- 0.169

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXXX
(φψ)-conformation: bbaabb
Pattern: [EHKRTY][afitv]x[agkl]x[dgrst][dkprs]xxxx[gimvwy]x
Conservation:1.5170.4830.921-0.563-0.2150.3040.485-1.769-0.412-1.0281.629-0.661-0.693
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ezv_A_3131ezv   A316328HFSLSYKDSGLWGEEEEE-SS-EEEExbbxbbaabbbbb
1fna_*_91fna   -921EVVAATPTSLLISEEEEE-SS-EEEEbxabbbaabbbbb
1j0m_A_3981j0m   A398410RAVLQRPGFALGLEEEEE-SS-EEEEbbbbbbaabbbbb
1kzl_A_1451kzl   A148160TITHVDDSTFSIMEEEEE-SS-EEEEbxabbbaabbbbb
1omw_A_1911omw   A195207RIIGRGGFGEVYGEEEEE-SS-EEEEbxNbbxaabbbxx
1qba_*_2891qba   -289301YELKIGKKEAQVIEEEEE-SS-EEEEbbbbbbaabbbbb
1rdq_E_431rdq   E4759KTLGTGSFGRVMLEEEEE-SS-EEEEbxabbbaabbbbx
1rwz_A_1601rwz   A162174RIEAKGDVDSIVFEEEEE-SS-EEEEbbbbbbaabbbbb
1vhz_A_91vhz   A1426ETVARSRLFTVESEEEEE-SS-EEEEbxabbbaabbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1kzl_A_1451kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID T - 145
1kzl_A_1451kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID S - 146
1kzl_A_1451kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID L - 147
1kzl_A_1451kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID T - 148
1kzl_A_1451kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID I - 149
1kzl_A_1451kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID T - 150
1kzl_A_1451kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID I - 159
1kzl_A_1451kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID M - 160
1kzl_A_1451kzl   A     CRM3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID M - 161
1rdq_E_431rdq   E     GOLGLYCEROL F - 43
1rdq_E_431rdq   E     GOLGLYCEROL D - 44
1rdq_E_431rdq   E     GOLGLYCEROL R - 45
1rdq_E_431rdq   E     GOLGLYCEROL I - 46
1rdq_E_431rdq   E     ADPADENOSINE-5'-DIPHOSPHATE L - 49
1rdq_E_431rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE L - 49
1rdq_E_431rdq   E     ADPADENOSINE-5'-DIPHOSPHATE G - 50
1rdq_E_431rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE G - 50
1rdq_E_431rdq   E     PO4PHOSPHATE ION T - 51
1rdq_E_431rdq   E     ADPADENOSINE-5'-DIPHOSPHATE T - 51
1rdq_E_431rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE T - 51
1rdq_E_431rdq   E     PO4PHOSPHATE ION G - 52
1rdq_E_431rdq   E     MGMAGNESIUM ION G - 52
1rdq_E_431rdq   E     ADPADENOSINE-5'-DIPHOSPHATE G - 52
1rdq_E_431rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE G - 52
1rdq_E_431rdq   E     PO4PHOSPHATE ION S - 53
1rdq_E_431rdq   E     MGMAGNESIUM ION S - 53
1rdq_E_431rdq   E     ADPADENOSINE-5'-DIPHOSPHATE S - 53
1rdq_E_431rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE S - 53
1rdq_E_431rdq   E     PO4PHOSPHATE ION F - 54
1rdq_E_431rdq   E     MGMAGNESIUM ION F - 54
1rdq_E_431rdq   E     ADPADENOSINE-5'-DIPHOSPHATE F - 54
1rdq_E_431rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE F - 54
1rdq_E_431rdq   E     ADPADENOSINE-5'-DIPHOSPHATE G - 55
1rdq_E_431rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE G - 55
1rdq_E_431rdq   E     ADPADENOSINE-5'-DIPHOSPHATE R - 56
1rdq_E_431rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE R - 56
1rdq_E_431rdq   E     ADPADENOSINE-5'-DIPHOSPHATE V - 57
1rdq_E_431rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE V - 57

Clusters included in this Subclass
CLUSTER: HA.4.89
CLUSTER: HA.5.97