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Information on SUBCLASS 2.3.2
Subclass Accession number: 6103
Subclass: 2.3.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 58

Average sequence ID (%) : 13.4 +/- 15.8
Average RMSD (Å) : 0.336 +/- 0.125

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpcpXX
(φψ)-conformation: bbeabb
Pattern: xx[cdehknqrsty][adgnv][adegknqst][adegknqrst]xx
Conservation:-0.551-0.723-0.4292.1670.232-0.333-0.362-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8d_*_1251a8d   -131138SLKGNNLIEEETTEEEbbbeabbb
1aa6_*_161aa6   -2027VVDNGKIVEE-SSSEExbbeabxa
1auk_*_1811auk   -181188LLANLSVEEEETTEEExbbeabxa
1az9_*_341az9   -3440TRSADSE.EEETTEE.xabeaxb.
1b2p_A_421b2p   A4451LYDNNNPIEEETTEEEbbbeabwa
1bbp_A_421bbp   A4956TPEGKSVKEE-SS-EEbwbeabbx
1cdy_*_351cdy   -3845GNQGSFLTEEETTEEEbbbeabxb
1d5r_A_2131d5r   A217224VCQLKVKIEEETTEEEbbbeabxa
1ddw_A_441ddw   A4956SLDGSKAIEEETTEEEbbbeabxa
1f00_I_6781f00   I684690VMKGDKP.EEETTEE.bbbeabx.
1f1s_A_9551f1s   A960967QKVGNDYQEEETTEEEbxbeabbb
1fp2_A_3351fp2   A340347PLTGFLSLEEETTEEExabeabbb
1fp5_A_4751fp5   A478484WLHNEVQ.EEETTEE.bbbeabx.
1g0u_H_201g0u   H2027STQGPIVAEEETTEEEbbxewbxa
1gen_*_5391gen   -542548IYSASTL.EEETTEE.bbbeaxx.
1hdm_A_311hdm   A3542EAYDEDQLEEETTEEEbbbeaxxa
1hn0_A_9931hn0   A9951002QVSGDNTEEEETTEEEbxbeabbx
1i52_A_311i52   A3136.SIGNQT..EETTEE..bbeabx.
1i7a_A_441i7a   A4956SVDGAKVIEEETTEEEbbbeabba
1i7q_B_1471i7q   B150157ARFGEMVMEEETTEEEbbbeaxxa
1iar_B_741iar   B7885LWAGQQLLEEETTEEExbbeabxa
1ihg_A_1671ihg   A167172.VKGEKP..EETTEE..bbeaxp.
1jgt_A_1191jgt   A125132VRTGDRVLEEETTEEEbbbeabbb
1jpc_*_311jpc   -3340LYDVDKPIEEETTEEEbbbeaxxa
1k8k_E_141k8k   E1421KLIGNMALEEETTEEExbbeaxxx
1kdg_A_4281kdg   A432439VRNGSQILEEETTEEEbbbeaxxa
1kgc_E_441kgc   E4855YFQNEAQLEEETTEEEbbbeaxxa
1kj1_A_311kj1   A3340LYDHSTSVEEETTEEEbbbeaxxa
1kxo_A_411kxo   A4855TPEGKSVKEE-SSSEEbwbeabbx
1l2t_A_21l2t   A1118YKMGEEIIEEETTEEEbbbeaxbb
1lf7_A_531lf7   A5865APQGTAMAEEETTEEEbwbeabbx
1lfk_A_131lfk   A1318.RQGLDP..EETTEE..bbeabx.
1lm8_B_421lm8   B4450LYKDDQL.EEETTEE.bbbeaxx.
1lvl_*_2821lvl   -282287.MNGAAI..EETTEE..bbeabx.
1mou_A_1041mou   A112119SIQGNCFTEEETTEEEbbbeabxb
1nqj_A_9721nqj   A972979QVDGNKVSEEETTEEEbxbeabbb
1nsc_A_2001nsc   A203210IKYGEAYTEEETTEEEbbbeaxxa
1onq_A_2171onq   A220226WMRGEQE.EEETTEE.xbbeaxx.
1oxx_K_591oxx   K6269LYFDDRLVEEETTEEEbbbeaxxa
1pl3_A_701pl3   A7481WANGNQIVEEETTEEEbxbeabxb
1qfm_A_801qfm   A8087FKKGKRYFEEETTEEEbxbeabbb
1qhv_A_4191qhv   A426433TKCGSQVLEEETTEEEbxbeabbx
1qhv_A_4791qhv   A480486FRNGNST.EEETTEE.xxbeabb.
1rif_A_1061rif   A106111.YSGNKR..EETTEE..bbeaxx.
1thx_*_771thx   -8087LVKGEQILEEETTEEEbbbeaxxa
1ucr_A_521ucr   A5562WSSGSTTMEEETTEEEbxbeabbb
1ued_A_211ued   A2126.RTNCDP..EETTEE..bbeaxx.
1uir_A_441uir   A4754LILDKDVQEEETTEEEbbbeabxa
1v8c_A_431v8c   A4349LFEGEGL.HEETTEE.abbeaxx.
1vhm_A_621vhm   A6774LLEDDTLVEEETTEEEbxbeabxb
1zxq_*_1211zxq   -125132LFRGNETLEEETTEEEbbbeabxa
2bat_*_3532bat   -354361FDNGNDLWEEETTEEEbxbeaxbb
2fb4_L_1472fb4   L150156WKADGSP.EEETTEE.bbbeabp.
2plc_*_902plc   -9198IYHGPIFLEEETTEEExbbeaxxa
2por_*_2262por   -238245STFGATTVEEETTEEEbbbeabbb
2ptd_*_782ptd   -8087LHHGPLYLEEETTEEExbbeaxxa
4aig_*_1584aig   -158164.LRGASLC.EETTEEE.bbeaxxx
8fab_A_1458fab   A148155WKADSSPIEEETTEEEbbbeaxwb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aa6_*_161aa6   *     FS4IRON/SULFUR CLUSTER I - 17
1auk_*_1811auk   *     NAGN-ACETYL-D-GLUCOSAMINE L - 182
1auk_*_1811auk   *     NAGN-ACETYL-D-GLUCOSAMINE A - 183
1auk_*_1811auk   *     NAGN-ACETYL-D-GLUCOSAMINE N - 184
1bbp_A_421bbp   A     BLVBILIVERDIN IX GAMMA CHROMOPHORE G - 44
1bbp_A_421bbp   A     BLVBILIVERDIN IX GAMMA CHROMOPHORE W - 45
1bbp_A_421bbp   A     BLVBILIVERDIN IX GAMMA CHROMOPHORE A - 46
1bbp_A_421bbp   A     BLVBILIVERDIN IX GAMMA CHROMOPHORE Y - 48
1bbp_A_421bbp   A     BLVBILIVERDIN IX GAMMA CHROMOPHORE N - 59
1bbp_A_421bbp   A     BLVBILIVERDIN IX GAMMA CHROMOPHORE Y - 60
1bbp_A_421bbp   A     BLVBILIVERDIN IX GAMMA CHROMOPHORE H - 61
1ddw_A_441ddw   A     MSESELENOMETHIONINE I - 47
1ddw_A_441ddw   A     MSESELENOMETHIONINE S - 59
1ddw_A_441ddw   A     MSESELENOMETHIONINE T - 60
1g0u_H_201g0u   H     MGMAGNESIUM ION Q - 22
1i7a_A_441i7a   A     FLCCITRATE ANION R - 46
1i7a_A_441i7a   A     PHEPHENYLALANINE I - 48
1i7a_A_441i7a   A     PHEPHENYLALANINE S - 49
1i7a_A_441i7a   A     PHEPHENYLALANINE V - 50
1i7a_A_441i7a   A     FLCCITRATE ANION N - 58
1i7a_A_441i7a   A     FLCCITRATE ANION S - 59
1i7a_A_441i7a   A     FLCCITRATE ANION T - 60
1jpc_*_311jpc   *     MANALPHA-D-MANNOSE V - 32
1jpc_*_311jpc   *     MANALPHA-D-MANNOSE Y - 34
1jpc_*_311jpc   *     MANALPHA-D-MANNOSE P - 39
1jpc_*_311jpc   *     MANALPHA-D-MANNOSE I - 40
1jpc_*_311jpc   *     MANALPHA-D-MANNOSE W - 41
1jpc_*_311jpc   *     MANALPHA-D-MANNOSE A - 42
1kdg_A_4281kdg   A     6FA6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE V - 428
1kdg_A_4281kdg   A     6FA6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE S - 429
1kdg_A_4281kdg   A     NAGN-ACETYL-D-GLUCOSAMINE N - 434
1kdg_A_4281kdg   A     NAGN-ACETYL-D-GLUCOSAMINE G - 435
1kdg_A_4281kdg   A     NAGN-ACETYL-D-GLUCOSAMINE L - 439
1kj1_A_311kj1   A     MANALPHA-D-MANNOSE L - 33
1kj1_A_311kj1   A     MANALPHA-D-MANNOSE D - 35
1kj1_A_311kj1   A     MANALPHA-D-MANNOSE S - 39
1kj1_A_311kj1   A     MANALPHA-D-MANNOSE V - 40
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE Y - 11
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 12
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE M - 13
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE I - 18
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE Y - 19
1l2t_A_21l2t   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 20
1lf7_A_531lf7   A     CITCITRIC ACID T - 53
1lf7_A_531lf7   A     CITCITRIC ACID T - 68
1lf7_A_531lf7   A     CITCITRIC ACID R - 70
1mou_A_1041mou   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID N - 109
1mou_A_1041mou   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID S - 111
1mou_A_1041mou   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID Y - 120
1mou_A_1041mou   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID V - 122
1oxx_K_591oxx   K     IODIODIDE ION F - 64
1oxx_K_591oxx   K     IODIODIDE ION D - 65
1oxx_K_591oxx   K     IODIODIDE ION D - 66
1oxx_K_591oxx   K     IODIODIDE ION R - 67
1oxx_K_591oxx   K     IODIODIDE ION V - 69
1pl3_A_701pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 70
1pl3_A_701pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 71
1pl3_A_701pl3   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 72
1qfm_A_801qfm   A     SGMMONOTHIOGLYCEROL F - 80
1qfm_A_801qfm   A     SGMMONOTHIOGLYCEROL F - 87
1qfm_A_801qfm   A     SGMMONOTHIOGLYCEROL F - 89
1qhv_A_4791qhv   A     SULSULFATE ANION R - 481
1qhv_A_4791qhv   A     SULSULFATE ANION N - 482
1qhv_A_4791qhv   A     SULSULFATE ANION G - 483
1qhv_A_4791qhv   A     SULSULFATE ANION N - 484
1vhm_A_621vhm   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID W - 62
1vhm_A_621vhm   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Y - 66
1vhm_A_621vhm   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID L - 75
1zxq_*_1211zxq   *     NAGN-ACETYL-D-GLUCOSAMINE N - 129
1zxq_*_1211zxq   *     NAGN-ACETYL-D-GLUCOSAMINE E - 130
1zxq_*_1211zxq   *     NAGN-ACETYL-D-GLUCOSAMINE T - 131
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL H - 229
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL Y - 232
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL G - 233
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL L - 234
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL V - 249
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL Q - 250
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL V - 251
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL L - 252
4aig_*_1584aig   *     FLXN-[(FURAN-2-YL)CARBONYL]-(S)-LEUCYL-(R)-[1-AMINO-2(1H-INDOL-3-YL)ETHYL]-PHOSPHONIC ACID C - 164
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
2plc_*_902plc   * CICINOSITOL BINDING SITE.H - 93
2ptd_*_782ptd   * ACTACTIVE SITE.H - 82

Clusters included in this Subclass
CLUSTER: HA.1.7
CLUSTER: HA.3.14