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Information on SUBCLASS 2.3.12
Subclass Accession number: 6113
Subclass: 2.3.12 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 20.4 +/- 26.9
Average RMSD (Å) : 0.400 +/- 0.193

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: hhcpXp
(φψ)-conformation: bbeabb
Pattern: [dgtv][qrs][giwy][FILMW][HLVY][DHNS][deqrs]x[EQ]x
Conservation:-0.867-0.352-0.9240.2490.2921.004-0.471-0.3502.252-0.835
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1buo_A_361buo   A3645VVIMVDSQEFEEEEESS-EEbbbbbeapbb
1d5m_B_231d5m   B2837DRYFYHQEEYEEEEETTEEEbbbbbeaxxa
1fng_B_241fng   B2837VRYFYNLEENEEEEETTEEEbbbbbeabxa
1fp5_A_4751fp5   A476484VQWLHNEVQ.EEEEETTEE.bbbbbeabx.
1fv1_B_231fv1   B2837HRDIYNQEEDEEEEETTEEEbbbbbeabxa
1gzq_A_231gzq   A2837GSGWLDDLQIEEEEETTEEEbbbbbeaxxa
1onq_A_231onq   A2837VSGWLSDLQTEEEEETTEEEbbbbbeaxxa
1uvq_B_231uvq   B2837TRYIYNREEYEEEEETTEEExbbbbeabxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d5m_B_231d5m   B     CY1ACETAMIDOMETHYLCYSTEINE D - 28
1d5m_B_231d5m   B     CLELEUCINE AMIDE D - 28
1d5m_B_231d5m   B     CY1ACETAMIDOMETHYLCYSTEINE Y - 30
1d5m_B_231d5m   B     CLELEUCINE AMIDE Y - 30
1gzq_A_231gzq   A     TWTDOCOSANE T - 26
1gzq_A_231gzq   A     TWTDOCOSANE Q - 27
1gzq_A_231gzq   A     TWTDOCOSANE G - 28
1gzq_A_231gzq   A     TWTDOCOSANE S - 29
1gzq_A_231gzq   A     TWTDOCOSANE G - 30
1gzq_A_231gzq   A     PII2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE H - 38
1gzq_A_231gzq   A     TWTDOCOSANE H - 38
1gzq_A_231gzq   A     TWTDOCOSANE G - 39
1gzq_A_231gzq   A     TWTDOCOSANE W - 40
1onq_A_231onq   A     NAGN-ACETYL-D-GLUCOSAMINE W - 23
1onq_A_231onq   A     FUCFUCOSE W - 23
1onq_A_231onq   A     SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE V - 28
1onq_A_231onq   A     SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE S - 29
1onq_A_231onq   A     SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE G - 30
1onq_A_231onq   A     SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE H - 38
1onq_A_231onq   A     SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE T - 39
1onq_A_231onq   A     SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE W - 40
1uvq_B_231uvq   B     NAGN-ACETYL-D-GLUCOSAMINE R - 23
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gzq_A_231gzq   A AC6TWT BINDING SITE FOR CHAIN AW - 40
1uvq_B_231uvq   B AC8ACY BINDING SITE FOR CHAIN BN - 33
1uvq_B_231uvq   B AC8ACY BINDING SITE FOR CHAIN BE - 35

Clusters included in this Subclass
CLUSTER: HA.2.98
CLUSTER: HA.3.82