Information on SUBCLASS 2.3.16 |
Subclass Accession number: 6117
Subclass: 2.3.16 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 10.4 +/- 12.0 Average RMSD (Å) : 0.517 +/- 0.147 Consensus geometry
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Consensus Sequence: | hpXpXh |
(φψ)-conformation: | bbeabp |
Pattern: | [cvy] | [ehqs] | [GILV] | [agkn] | [aivy] | [fy] | [dehr] | [egr] | [DEGKS] | x | [lpv] | [itv] | [gly] | [aes] | [fglt] | [efkqr] | [fgvwy] | x |
Conservation: | -0.002 | -0.004 | 0.867 | -0.420 | -0.078 | 3.091 | -0.249 | -0.298 | 0.695 | -0.554 | -0.254 | 0.948 | -0.144 | 0.435 | -1.359 | -0.710 | -0.746 | -1.219 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1fon_A_51 | 1fon | A | 53 | 70 | VVLGEYDRSVLEGSEQVI | EEEEEEETTEEEEEEEEE | bbbbxbbeabxbebxbbb |
1ixl_A_100 | 1ixl | A | 103 | 120 | VEVKVYREEEVVLEGKFY | EEEEEEETTEEEEEEEEE | bxbbbbbeaxxabbbbbx |
1lqv_A_24 | 1lqv | A | 27 | 44 | YQGNASLGGHLTHVLEGP | EEEEEEETTEEEEEEEEE | bbbbbbbeabxabbbbex |
1q2y_A_43 | 1q2y | A | 43 | 60 | EHIVVYDGEKPVGAGRWR | EEEEEEETTEEEEEEEEE | bbbbbbbeaxwabbbbbb |
1vdw_A_100 | 1vdw | A | 101 | 118 | VSVAIFHEKDPIYAFIYE | EEEEEEETTEEEEEEEEE | bbbbbbxeabwabbbbel |
1ygs_*_322 | 1ygs | - | 324 | 341 | CSIAYFEMDVQVGETFKV | EEEEEEETTEEEEEEEEE | bbbbbbbeabxbebxxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ixl_A_100 | 1ixl | A | MSESELENOMETHIONINE | C - 121 |
1lqv_A_24 | 1lqv | A | NAGN-ACETYL-D-GLUCOSAMINE | Q - 28 |
1lqv_A_24 | 1lqv | A | NAGN-ACETYL-D-GLUCOSAMINE | G - 29 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | G - 29 |
1lqv_A_24 | 1lqv | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 30 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | N - 30 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | A - 31 |
1lqv_A_24 | 1lqv | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 37 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | H - 39 |
1lqv_A_24 | 1lqv | A | NAGN-ACETYL-D-GLUCOSAMINE | V - 40 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | V - 40 |
1lqv_A_24 | 1lqv | A | PTYPHOSPHATIDYLETHANOLAMINE | L - 41 |
Clusters included in this Subclass |
CLUSTER: HA.1.42 |
CLUSTER: HA.3.95 |