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Information on SUBCLASS 2.3.16
Subclass Accession number: 6117
Subclass: 2.3.16 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 10.4 +/- 12.0
Average RMSD (Å) : 0.517 +/- 0.147

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: hpXpXh
(φψ)-conformation: bbeabp
Pattern: [cvy][ehqs][GILV][agkn][aivy][fy][dehr][egr][DEGKS]x[lpv][itv][gly][aes][fglt][efkqr][fgvwy]x
Conservation:-0.002-0.0040.867-0.420-0.0783.091-0.249-0.2980.695-0.554-0.2540.948-0.1440.435-1.359-0.710-0.746-1.219
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1fon_A_511fon   A5370VVLGEYDRSVLEGSEQVIEEEEEEETTEEEEEEEEEbbbbxbbeabxbebxbbb
1ixl_A_1001ixl   A103120VEVKVYREEEVVLEGKFYEEEEEEETTEEEEEEEEEbxbbbbbeaxxabbbbbx
1lqv_A_241lqv   A2744YQGNASLGGHLTHVLEGPEEEEEEETTEEEEEEEEEbbbbbbbeabxabbbbex
1q2y_A_431q2y   A4360EHIVVYDGEKPVGAGRWREEEEEEETTEEEEEEEEEbbbbbbbeaxwabbbbbb
1vdw_A_1001vdw   A101118VSVAIFHEKDPIYAFIYEEEEEEEETTEEEEEEEEEbbbbbbxeabwabbbbel
1ygs_*_3221ygs   -324341CSIAYFEMDVQVGETFKVEEEEEEETTEEEEEEEEEbbbbbbbeabxbebxxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ixl_A_1001ixl   A     MSESELENOMETHIONINE C - 121
1lqv_A_241lqv   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 28
1lqv_A_241lqv   A     NAGN-ACETYL-D-GLUCOSAMINE G - 29
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE G - 29
1lqv_A_241lqv   A     NAGN-ACETYL-D-GLUCOSAMINE N - 30
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE N - 30
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE A - 31
1lqv_A_241lqv   A     NAGN-ACETYL-D-GLUCOSAMINE L - 37
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE H - 39
1lqv_A_241lqv   A     NAGN-ACETYL-D-GLUCOSAMINE V - 40
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE V - 40
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE L - 41

Clusters included in this Subclass
CLUSTER: HA.1.42
CLUSTER: HA.3.95