Information on SUBCLASS 2.3.17 |
Subclass Accession number: 6118
Subclass: 2.3.17 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 25.9 +/- 31.3 Average RMSD (Å) : 0.600 +/- 0.337 Consensus geometry
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Consensus Sequence: | phcXXX |
(φψ)-conformation: | bbeapa |
Pattern: | [CNR] | [FIL] | [NS] | [IVY] | [GN] | [AE] | x | x | [ACN] |
Conservation: | -0.742 | 0.312 | 1.192 | 0.263 | 1.576 | 0.418 | -1.316 | -0.952 | -0.750 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1c1l_A_40 | 1c1l | A | 48 | 56 | RFNYGADQN | EEEETTEEE | babbeaxbl |
1c22_A_70 | 1c22 | A | 70 | 78 | CISINEVVC | EEEETTEEE | bbbxeaxab |
1qxy_A_67 | 1qxy | A | 67 | 75 | CISVNEEVA | EEEETTEEE | bbbbeaxab |
1xgs_A_53 | 1xgs | A | 53 | 61 | NLSINEIAA | EEEETTEEE | xbbxeaxab |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1c1l_A_40 | 1c1l | A | GALD-GALACTOSE | H - 44 |
1c1l_A_40 | 1c1l | A | GALD-GALACTOSE | D - 46 |
1c1l_A_40 | 1c1l | A | GALD-GALACTOSE | R - 48 |
1c1l_A_40 | 1c1l | A | GLCGLUCOSE | R - 48 |
1c1l_A_40 | 1c1l | A | GALD-GALACTOSE | Y - 51 |
1c1l_A_40 | 1c1l | A | GLCGLUCOSE | Y - 51 |
1c1l_A_40 | 1c1l | A | GLCGLUCOSE | D - 54 |
1c1l_A_40 | 1c1l | A | GALD-GALACTOSE | V - 59 |
1c1l_A_40 | 1c1l | A | GLCGLUCOSE | V - 59 |
1c1l_A_40 | 1c1l | A | GALD-GALACTOSE | M - 60 |
1c1l_A_40 | 1c1l | A | GALD-GALACTOSE | N - 61 |
1c22_A_70 | 1c22 | A | MF32-AMINO-4-TRIFLUOROMETHYLSULFANYL-BUTYRIC ACID | C - 70 |
1qxy_A_67 | 1qxy | A | M2C(2S)-2-AMINO-4-(METHYLSULFANYL)-1-PYRIDIN-2-YLBUTANE-1,1-DIOL | C - 67 |
1qxy_A_67 | 1qxy | A | M2C(2S)-2-AMINO-4-(METHYLSULFANYL)-1-PYRIDIN-2-YLBUTANE-1,1-DIOL | V - 74 |
1qxy_A_67 | 1qxy | A | M2C(2S)-2-AMINO-4-(METHYLSULFANYL)-1-PYRIDIN-2-YLBUTANE-1,1-DIOL | A - 75 |
Clusters included in this Subclass |
CLUSTER: HA.1.66 |