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Information on SUBCLASS 2.3.17
Subclass Accession number: 6118
Subclass: 2.3.17 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 25.9 +/- 31.3
Average RMSD (Å) : 0.600 +/- 0.337

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: phcXXX
(φψ)-conformation: bbeapa
Pattern: [CNR][FIL][NS][IVY][GN][AE]xx[ACN]
Conservation:-0.7420.3121.1920.2631.5760.418-1.316-0.952-0.750
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c1l_A_401c1l   A4856RFNYGADQNEEEETTEEEbabbeaxbl
1c22_A_701c22   A7078CISINEVVCEEEETTEEEbbbxeaxab
1qxy_A_671qxy   A6775CISVNEEVAEEEETTEEEbbbbeaxab
1xgs_A_531xgs   A5361NLSINEIAAEEEETTEEExbbxeaxab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c1l_A_401c1l   A     GALD-GALACTOSE H - 44
1c1l_A_401c1l   A     GALD-GALACTOSE D - 46
1c1l_A_401c1l   A     GALD-GALACTOSE R - 48
1c1l_A_401c1l   A     GLCGLUCOSE R - 48
1c1l_A_401c1l   A     GALD-GALACTOSE Y - 51
1c1l_A_401c1l   A     GLCGLUCOSE Y - 51
1c1l_A_401c1l   A     GLCGLUCOSE D - 54
1c1l_A_401c1l   A     GALD-GALACTOSE V - 59
1c1l_A_401c1l   A     GLCGLUCOSE V - 59
1c1l_A_401c1l   A     GALD-GALACTOSE M - 60
1c1l_A_401c1l   A     GALD-GALACTOSE N - 61
1c22_A_701c22   A     MF32-AMINO-4-TRIFLUOROMETHYLSULFANYL-BUTYRIC ACID C - 70
1qxy_A_671qxy   A     M2C(2S)-2-AMINO-4-(METHYLSULFANYL)-1-PYRIDIN-2-YLBUTANE-1,1-DIOL C - 67
1qxy_A_671qxy   A     M2C(2S)-2-AMINO-4-(METHYLSULFANYL)-1-PYRIDIN-2-YLBUTANE-1,1-DIOL V - 74
1qxy_A_671qxy   A     M2C(2S)-2-AMINO-4-(METHYLSULFANYL)-1-PYRIDIN-2-YLBUTANE-1,1-DIOL A - 75

Clusters included in this Subclass
CLUSTER: HA.1.66