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PDB code:

Information on SUBCLASS 2.5.3

Subclass Accession number: 6139 Subclass: 2.5.3 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 14 Average sequence ID (%) : 15.7 +/- 18.4 Average RMSD (Å) : 0.400 +/- 0.141 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bia_*_176	1bia	-	176	187	DLYLQDRKLAGI	EEEETTEEEEEE	bbbblvbxabbb
1bol_A_179	1bol	A	180	191	IDCSSGTLSDVA	EEEETTEEEEEE	bbbblvbxabbb
1ci9_A_37	1ci9	A	41	52	IVARHGEILYRR	EEEETTEEEEEE	bbbblvbxabbb
1cjw_A_81	1cjw	A	83	94	GWFVEGRLVAFI	EEEETTEEEEEE	bbbblvbxabbb
1ds6_B_120	1ds6	B	128	139	HTYRTGVKVDKA	EEEETTEEEEEE	bxbbvvbxabbb
1fso_A_123	1fso	A	131	142	HTYRAGVAIDAT	EEEETTEEEEEE	bbbbvvxxabbb
1gr3_A_595	1gr3	A	613	624	GLYKNGTPVMYT	EEEETTEEEEEE	bxbblvbwabbb
1h7w_A_391	1h7w	A	396	407	VIVKGGRIVAVQ	EEEETTEEEEEE	bxbblvbxabbb
1jke_A_2	1jke	A	12	23	SVTVEGEVTGEI	EEEETTEEEEEE	bbbbvvxxabbb
1kmt_A_123	1kmt	A	131	142	HTYRKGVKIDKT	EEEETTEEEEEE	bbbblvbxabbb
1onq_A_94	1onq	A	102	113	CELHSGKVSGSF	EEEETTEEEEEE	bbbblvbxabbb
1oxc_A_13	1oxc	A	29	40	NVLVNNETAATF	EEEETTEEEEEE	bbbblvbxabbb
1uqx_A_13	1uqx	A	29	40	QVLVDNVVKATF	EEEETTEEEEEE	bbbblvbxabbb
1ut7_A_93	1ut7	A	103	114	IISTEGQRVGIK	EEEETTEEEEEE	xbbblvbxabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gr3_A_595	1gr3	A	CPS3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE	H - 609
1gr3_A_595	1gr3	A	CPS3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE	W - 611
1gr3_A_595	1gr3	A	CPS3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE	Y - 625
1gr3_A_595	1gr3	A	CACALCIUM ION	D - 626
1jke_A_2	1jke	A	ZNZINC ION	E - 16
1jke_A_2	1jke	A	ZNZINC ION	E - 18
1onq_A_94	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	V - 98
1onq_A_94	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	T - 99
1onq_A_94	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	G - 100
1onq_A_94	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	G - 101
1onq_A_94	1onq	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 109
1onq_A_94	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	F - 113
1onq_A_94	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	L - 114
1onq_A_94	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	L - 116
1oxc_A_13	1oxc	A	FUCFUCOSE	N - 21
1oxc_A_13	1oxc	A	CACALCIUM ION	N - 21
1oxc_A_13	1oxc	A	FUCFUCOSE	S - 22
1oxc_A_13	1oxc	A	CACALCIUM ION	S - 22
1oxc_A_13	1oxc	A	FUCFUCOSE	S - 23
1oxc_A_13	1oxc	A	FUCFUCOSE	G - 24
1oxc_A_13	1oxc	A	FUCFUCOSE	Q - 26
1oxc_A_13	1oxc	A	FUCFUCOSE	T - 45
1uqx_A_13	1uqx	A	MAM1-O-METHYL-ALPHA-D-MANNOSE	N - 21
1uqx_A_13	1uqx	A	CACALCIUM ION	A - 22
1uqx_A_13	1uqx	A	MAM1-O-METHYL-ALPHA-D-MANNOSE	A - 22
1uqx_A_13	1uqx	A	MAM1-O-METHYL-ALPHA-D-MANNOSE	A - 23
1uqx_A_13	1uqx	A	MAM1-O-METHYL-ALPHA-D-MANNOSE	N - 24
1uqx_A_13	1uqx	A	MAM1-O-METHYL-ALPHA-D-MANNOSE	T - 25
1uqx_A_13	1uqx	A	MAM1-O-METHYL-ALPHA-D-MANNOSE	Q - 26
1uqx_A_13	1uqx	A	MAM1-O-METHYL-ALPHA-D-MANNOSE	T - 45
1ut7_A_93	1ut7	A	AUGOLD ION	T - 106
1ut7_A_93	1ut7	A	AUGOLD ION	V - 111

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gr3_A_595	1gr3	A	CPSCPS BINDING SITE FOR CHAIN A	W - 611
1gr3_A_595	1gr3	A	CPSCPS BINDING SITE FOR CHAIN A	K - 616
1gr3_A_595	1gr3	A	CPSCPS BINDING SITE FOR CHAIN A	Y - 625
1uqx_A_13	1uqx	A	AC1CA BINDING SITE FOR CHAIN A	N - 21
1uqx_A_13	1uqx	A	AC3MAM BINDING SITE FOR CHAIN A	A - 22
1uqx_A_13	1uqx	A	AC3MAM BINDING SITE FOR CHAIN A	N - 34

Clusters included in this Subclass

CLUSTER: HA.2.48

CLUSTER: HA.3.52

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