Information on SUBCLASS 2.5.4 |
Subclass Accession number: 6140
Subclass: 2.5.4 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 20.6 +/- 17.6 Average RMSD (Å) : 0.562 +/- 0.141 Consensus geometry
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Consensus Sequence: | hGXGXX |
(φψ)-conformation: | aellbb |
Pattern: | x | x | x | x | x | [AFLV] | [G] | [adegns] | [GS] | x | x | x | x |
Conservation: | -0.532 | -0.572 | -0.379 | -0.164 | -0.415 | 0.202 | 2.565 | -0.397 | 1.766 | -0.447 | -0.382 | -0.751 | -0.492 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a73_A_24 | 1a73 | A | 26 | 38 | THHVPLGGGLQGT | EEEEEEETTEEEE | xbxbwaelvxbbb |
1e79_D_46 | 1e79 | D | 48 | 60 | EVAQHLGESTVRT | EEEEEEETTEEEE | bxabbaellbbbb |
1fxk_C_75 | 1fxk | C | 75 | 87 | EVIMSVGAGVAIK | EEEEEEETTEEEE | bbxbxaelvbbbx |
1huf_A_88 | 1huf | A | 88 | 100 | YDLRSVGNGNSVL | EEEEEEETTEEEE | bbbbpaevvxbbx |
1kol_A_3 | 1kol | A | 4 | 16 | RGVVYLGSGKVEV | EEEEEEETTEEEE | bbxbxaelvbbbx |
1lyv_A_311 | 1lyv | A | 318 | 330 | TQQVGLGDGIMAD | EEEEEEETTEEEE | Fxbbxaelvxbbb |
1nsz_A_3 | 1nsz | A | 3 | 15 | IKIRDFGLGSDLI | EEEEEEETTEEEE | bbbbxaevvxbbb |
1o4y_A_93 | 1o4y | A | 95 | 107 | IQAQPAGNGKSYN | EEEEEEETTEEEE | bbbbwaelvbbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1a73_A_24 | 1a73 | A | ZNZINC ION | L - 39 |
1a73_A_24 | 1a73 | A | ZNZINC ION | H - 40 |
1a73_A_24 | 1a73 | A | ZNZINC ION | C - 41 |
1a73_A_24 | 1a73 | A | ZNZINC ION | Y - 42 |
Clusters included in this Subclass |
CLUSTER: HA.1.40 |