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Information on SUBCLASS 3.4.1
Subclass Accession number: 6184
Subclass: 3.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 69

Average sequence ID (%) : 32.5 +/- 30.5
Average RMSD (Å) : 0.235 +/- 0.207

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXXXpXX
(φψ)-conformation: bblgabb
Pattern: x[cfltvy][ciklmv][fhilvy]x[adgnstv][DEHKNQRSTY][dhknqrsty]x
Conservation:-0.0770.9371.245-0.017-1.435-0.1551.335-0.813-1.020
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a0q_L_441a0q   L4654LLIHYTSTLEEEETTTEExabblgaxx
1a14_L_441a14   L4654LLIYYTSNLEEEETTTEExabbvGaxx
1a2y_A_451a2y   A4654LLVYYTTTLEEEETTTEExabblgaxx
1agi_*_631agi   -6371GQPYRGDLREEEETTTEEbbwblGabb
1b0w_A_451b0w   A4654LLIYDASTLEEEETTTEExabblgaxx
1bjm_A_471bjm   A4755LLIYEDNSREEEETTTEExabblgaxp
1bww_A_471bww   A4856LLIYEASNLEEEETTTEExabblgaxx
1c5c_L_441c5c   L4654RLIYDATKLEEEETTTEExabblgabx
1c5d_A_451c5d   A4654QLIRYTSILEEEETTTEExabblgaxx
1cr9_L_451cr9   L4654RLIFLVSKREEEETTTEExabblgaxx
1csn_*_71csn   -713..VVGVHYK..EETTTEE..bblgabx
1cvl_*_221cvl   -2228..KFANVVD..EETTTEE..bblvaxx
1dl7_L_451dl7   L4856GLIGGTKHREEEETTTEExabblUabx
1dlf_L_451dlf   L4654LLIYKVSNREEEETTTEExabblgaxx
1dqd_L_441dqd   L4553LCIYTTSNLEEEETTTEEpabblgaxx
1dvf_C_441dvf   C4654LLIYYTSRLEEEETTTEExabbvGaxx
1ek3_A_451ek3   A4654LLIYWASSREEEETTTEExabblgaxx
1emt_L_441emt   L4654LLIYYTSSLEEEETTTEExabblgaxx
1enf_A_351enf   A3541..ISGEKDL..EETTTEE..xblgabb
1f4x_L_451f4x   L4856GLIGATNNREEEETTTEExabblgaxx
1f58_L_451f58   L4654LLIFAASTLEEEETTTEExabblgaxx
1f8t_L_451f8t   L4654RLIYLVSKLEEEETTTEExabblgaxx
1fgv_L_451fgv   L4654LLIYYTSTLEEEETTTEExabblgaxx
1fns_L_441fns   L4654LLIFYTSSLEEEETTTEExabblgaxx
1gaf_L_441gaf   L4654RLIYAASTLEEEETTTEExabbvgaxx
1gd1_O_2981gd1   O298305.MVIDGKMV.EEETTTEE.bbblUaxb
1h0d_A_451h0d   A4654LLIYAASNQEEEETTTEExabblgaxx
1hdg_O_2981hdg   O298305.NVIGGKLV.EEETTTEE.bbbvUaxb
1hrn_A_21hrn   A614LTNYMDTQYEEEETTTEEbbbxlvabb
1i7n_A_1351i7n   A135141..KILGDYD..EETTTEE..bblGaxx
1ikf_L_441ikf   L4654LLIFYTSRLEEEETTTEExabblUaxx
1j0m_A_2431j0m   A243250.FVQHTTFA.EEETTTEE.bbbvUabx
1jfq_L_441jfq   L4654LLIYFTSRSEEEETTTEExabblgaxx
1jhl_L_451jhl   L4654LLIYSGSTLEEEETTTEExabblGaxx
1jpt_L_451jpt   L4654VLIYYATSLEEEETTTEExabblgaxx
1kcv_L_451kcv   L4654LLIYGASNREEEETTTEExabbvgaxx
1knm_A_521knm   A5259.LRVYGDKC.EEETTTEE.bxblGabb
1l7t_L_501l7t   L5159LLIYKAYKREEEETTTEExabblgaxx
1lk3_L_441lk3   L4553LLIYKASNLEEEETTTEExabblgaxx
1mex_L_451mex   L4654TLIYSASYREEEETTTEExabblgaxx
1mfa_*_451mfa   -4856GLIGDTNNREEEETTTEExabblgaxx
1mju_L_451mju   L4654LLIYRMSNLEEEETTTEExabblgaxx
1mlb_A_451mlb   A4654LLIKYVSQSEEEETTTEExabblgaxb
1mqk_L_451mqk   L4654FLVYNAKTLEEEETTTEExabblgaxx
1n0x_L_451n0x   L4654LVIHGVSNREEEETTTEExabbvgaxx
1n7m_H_451n7m   H4654LLIYSASNREEEETTTEExabblgaxx
1n7o_A_3961n7o   A396403.YIDHTNVA.EEETTTEE.bbblgabp
1ncw_L_441ncw   L4654RLIYLGTKLEEEETTTEExabblgabx
1o6y_A_61o6y   A612..HLSDRYE..EETTTEE..bbllabx
1oaq_L_451oaq   L4856GLIGGTNNREEEETTTEExabblgaxx
1op3_K_451op3   K4654LLIYKASTLEEEETTTEExabblgaxx
1osp_L_451osp   L4654LLISGATSLEEEETTTEEpabblgaxx
1q9r_A_451q9r   A4654LLIYWASTREEEETTTEExabblgaxx
1qfm_A_3371qfm   A341349VACVRSNFLEEEETTTEEbbbblGabb
1qkz_L_451qkz   L4654LLIYTVSNREEEETTTEExabblgaxx
1qmy_A_1371qmy   A141149IFLKGQEHAEEEETTTEEbbxbvvabx
1rhh_A_451rhh   A4654LLIYGASTREEEETTTEExabbvgaxx
1rur_L_451rur   L4654LLIYQMSKLEEEETTTEExabblgaxx
1rwh_A_2301rwh   A230237.FIQHSTTP.EEETTTEE.bbbvgabx
1rzg_B_451rzg   B4654LLMYKASSLEEEETTTEExabblgaxx
1sek_*_2271sek   -232240MSYEGDQASEEBGGGSEEbbxpgvabb
1ub5_B_501ub5   B5159LLIYQMSNLEEEETTTEExabblgaxx
1vge_L_451vge   L4654LLIYDASNLEEEETTTEExabblgaxx
1wtl_A_441wtl   A4654VLIYGASILEEEETTTEExabblgaxx
1yei_L_441yei   L4654RLIHLVSKLEEEETTTEExabblgaxx
2cgr_L_502cgr   L5159LLIYRVSNREEEETTTEEpabblgaxx
2f5b_L_452f5b   L4654LLIYDASSLEEEETTTEExabblgaxx
2jel_L_452jel   L4654LLIYKISNREEEETTTEExabblgaxx
2pcp_A_442pcp   A4654LLIYKVTNREEEETTTEExabblgaxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a0q_L_441a0q   L     HEPPHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE L - 46
1a0q_L_441a0q   L     HEPPHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE I - 48
1a0q_L_441a0q   L     HEPPHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE H - 49
1a0q_L_441a0q   L     HEPPHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE Y - 50
1a2y_A_451a2y   A     PO4PHOSPHATE ION Y - 50
1c5c_L_441c5c   L     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID R - 46
1c5c_L_441c5c   L     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID I - 48
1c5c_L_441c5c   L     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID Y - 49
1c5c_L_441c5c   L     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID D - 50
1csn_*_71csn   *     ATPADENOSINE-5'-TRIPHOSPHATE I - 18
1csn_*_71csn   *     ATPADENOSINE-5'-TRIPHOSPHATE G - 19
1csn_*_71csn   *     ATPADENOSINE-5'-TRIPHOSPHATE E - 20
1csn_*_71csn   *     MGMAGNESIUM ION E - 20
1dl7_L_451dl7   L     NCHP-NITROPHENYL-PHOSPHOCHOLINE G - 51
1dl7_L_451dl7   L     NCHP-NITROPHENYL-PHOSPHOCHOLINE G - 52
1dl7_L_451dl7   L     NCHP-NITROPHENYL-PHOSPHOCHOLINE T - 53
1dl7_L_451dl7   L     NCHP-NITROPHENYL-PHOSPHOCHOLINE H - 55
1gaf_L_441gaf   L     NPE5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID R - 46
1gaf_L_441gaf   L     NPE5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID L - 47
1gaf_L_441gaf   L     NPE5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID I - 48
1gaf_L_441gaf   L     NPE5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID Y - 49
1gaf_L_441gaf   L     NPE5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID A - 50
1h0d_A_451h0d   A     GOLGLYCEROL S - 52
1hrn_A_21hrn   A     PPP3-PHENYL-1,2-PROPANDIOL T - 12
1hrn_A_21hrn   A     PPP3-PHENYL-1,2-PROPANDIOL Q - 13
1ikf_L_441ikf   L     MLEN-METHYLLEUCINE Y - 50
1mex_L_451mex   L     RAC4-(2-DIMETHYLCARBAMOYL-PHENYLCARBAMOYLOXYMETHYL)-BENZOIC ACID T - 46
1mex_L_451mex   L     RAC4-(2-DIMETHYLCARBAMOYL-PHENYLCARBAMOYLOXYMETHYL)-BENZOIC ACID I - 48
1mex_L_451mex   L     RAC4-(2-DIMETHYLCARBAMOYL-PHENYLCARBAMOYLOXYMETHYL)-BENZOIC ACID Y - 49
1mex_L_451mex   L     RAC4-(2-DIMETHYLCARBAMOYL-PHENYLCARBAMOYLOXYMETHYL)-BENZOIC ACID S - 50
1mju_L_451mju   L     GOLGLYCEROL Q - 45
1mju_L_451mju   L     GOLGLYCEROL L - 46
1mju_L_451mju   L     GOLGLYCEROL L - 47
1mju_L_451mju   L     GOLGLYCEROL Y - 49
1mju_L_451mju   L     GOLGLYCEROL R - 50
1mju_L_451mju   L     GOLGLYCEROL M - 51
1mju_L_451mju   L     GOLGLYCEROL N - 53
1mju_L_451mju   L     GOLGLYCEROL L - 54
1n7m_H_451n7m   H     MMPN-METHYLMESOPORPHYRIN L - 46
1n7m_H_451n7m   H     MMPN-METHYLMESOPORPHYRIN I - 48
1n7m_H_451n7m   H     MMPN-METHYLMESOPORPHYRIN Y - 49
1n7m_H_451n7m   H     MMPN-METHYLMESOPORPHYRIN S - 50
1o6y_A_61o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER L - 17
1o6y_A_61o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER G - 18
1o6y_A_61o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER F - 19
1rwh_A_2301rwh   A     NGLACETYLGALACTOSAMINE-4-SULFATE Q - 232
1rwh_A_2301rwh   A     GCT4,5-DIHYDROXY-TETRAHYDRO-PYRAN-2-CARBOXYLIC ACID Q - 232
1rwh_A_2301rwh   A     PO4PHOSPHATE ION Q - 232
1rwh_A_2301rwh   A     NGLACETYLGALACTOSAMINE-4-SULFATE H - 233
1rwh_A_2301rwh   A     GCT4,5-DIHYDROXY-TETRAHYDRO-PYRAN-2-CARBOXYLIC ACID H - 233
1rwh_A_2301rwh   A     PO4PHOSPHATE ION H - 233
1rzg_B_451rzg   B     SUCSUCROSE K - 50
1yei_L_441yei   L     ZNZINC ION H - 49
1yei_L_441yei   L     ZN3ZINC ION, 1 WATER COORDINATED H - 49
1yei_L_441yei   L     ZNZINC ION L - 50
1yei_L_441yei   L     ZN3ZINC ION, 1 WATER COORDINATED L - 50
1yei_L_441yei   L     ZNZINC ION K - 53
1yei_L_441yei   L     ZN3ZINC ION, 1 WATER COORDINATED K - 53
1yei_L_441yei   L     ZNZINC ION L - 54
1yei_L_441yei   L     ZN3ZINC ION, 1 WATER COORDINATED L - 54

Clusters included in this Subclass
CLUSTER: HA.2.9
CLUSTER: HA.4.124
CLUSTER: HA.4.7