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Information on SUBCLASS 3.8.1
Subclass Accession number: 6195
Subclass: 3.8.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 36

Average sequence ID (%) : 25.7 +/- 21.5
Average RMSD (Å) : 0.425 +/- 0.130

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XhXcXGX
(φψ)-conformation: bbpgaeb
Pattern: xx[afilvy][ehkpqrst][dgnqrs]x[G]xx
Conservation:-0.478-0.493-0.175-0.3130.422-0.4402.541-0.584-0.479
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b09_A_631b09   A6674FWSKDIGYSEEETTTEEEbxxpvaexb
1b8z_A_421b8z   A4250VQIVGFGSFEEETTTEEEbbbpvaebb
1clc_*_1171clc   -121128LAVPGVGK.EEETTTEE.bbbpvaeb.
1d2e_A_2641d2e   A266274YSIPGRGTVEEETTTEEEbbbpvaexb
1exm_A_2271exm   A229237FTITGRGTVEEETTTEEEbbbpvaexb
1feh_A_501feh   A5159VEVEGTGLVEEETTTEEEbbbpgaexb
1fl0_A_2941fl0   A294300.EVKGKGV..EETTTEE..bbpvaex.
1gef_A_751gef   A8088VKFLNVGWREEETTTEEEbbxpvaexb
1gkz_A_3531gkz   A357365QSLQGIGTDEEETTTEEEbxbpgaebb
1gtr_A_5151gtr   A516524FQFEREGYFEEETTTEEEbxxpvaebb
1gtt_A_4071gtt   A410418VEVEGVGRLEEETTTEEEbbbpvaebb
1gxq_A_2151gxq   A216224QTVRGTGYREEETTTEEEbxbplaebb
1hpl_A_21hpl   A311VCYERLGCFEEETTTEEEbbbxgaebb
1i58_A_5201i58   A524532ESEKDKGTKEEETTTEEEbbbpvaebb
1j8h_E_311j8h   E3644RQDPGLGLREEETTTEEEbbbpvaebb
1j93_A_941j93   A95103DIIKGKGPVEEETTTEEEbxxpgaewb
1jny_A_2351jny   A241249YSISGVGTVEEETTTEEEbbxpgaexb
1jp4_A_1671jp4   A170178WGVLGLGAFEEETTTEEEbbbxvaebb
1k0w_A_1651k0w   A166174VLVHSHGPFEEETTTEEEbbxpUaexb
1kgs_A_2121kgs   A213221HTVRGIGYVEEETTTEEEbbbpvaebb
1ko7_A_1981ko7   A199207LEIRGLGIIEEETTTEEEbbbpgaexb
1nvm_B_2581nvm   B258266LNIPGLGRFEEETTTEEExxbpvaebb
1oa8_A_6511oa8   A651659FFVFGQGWSEEETTTEEExxxpvaexb
1ofz_A_2861ofz   A291299QWISGKGWSEEETTTEEEbxbpvaexb
1ohq_A_331ohq   A3846RQAPGKGLEEEETTTEEEbbbxgaebb
1oke_A_1711oke   A173181AELTGYGTVEEETTTEEEbxxpvaebb
1q0x_H_331q0x   H3846KQRPGHGLEEE-TTS-EEbbbpvaebb
1q7e_A_3581q7e   A361369VEQPLRGKYEEETTTEEEbxbpgaexb
1r3s_A_991r3s   A99107TMVPGKGPSEEETTTEEEbbxplaewb
1r51_A_1271r51   A133141DVVEGKGIDEEETTTEEEbbbpvaebb
1rp1_*_21rp1   -311VCYEQIGCFEEETTTEEEbbbpvaebb
1rwh_A_5641rwh   A565573VHLEGFGGYEEETTTEEEbbbpvaebb
1tcr_B_311tcr   B3644RQDTGHGLREEETTTEEEbbbpvaebb
1vdw_A_1231vdw   A126134EGIPGKGSYEEETTTEEEbbbpvaebb
1vju_A_421vju   A4553WTREGGGGGEEETTTEEEbbbxvaeeb
2reb_*_2572reb   -261268QILYGEGI.EEETTTEE.bbxpvaex.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b09_A_631b09   A     CACALCIUM ION L - 64
1b09_A_631b09   A     PCPHOSPHOCHOLINE L - 64
1b09_A_631b09   A     PCPHOSPHOCHOLINE F - 66
1b09_A_631b09   A     PCPHOSPHOCHOLINE S - 68
1b09_A_631b09   A     PCPHOSPHOCHOLINE S - 74
1b09_A_631b09   A     PCPHOSPHOCHOLINE T - 76
1feh_A_501feh   A     FESFE2/S2 (INORGANIC) CLUSTER T - 50
1feh_A_501feh   A     FESFE2/S2 (INORGANIC) CLUSTER T - 60
1gkz_A_3531gkz   A     ADPADENOSINE-5'-DIPHOSPHATE L - 356
1gkz_A_3531gkz   A     ADPADENOSINE-5'-DIPHOSPHATE G - 363
1gkz_A_3531gkz   A     ADPADENOSINE-5'-DIPHOSPHATE T - 364
1gkz_A_3531gkz   A     ADPADENOSINE-5'-DIPHOSPHATE V - 366
1i58_A_5201i58   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER G - 530
1i58_A_5201i58   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER T - 531
1i58_A_5201i58   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER V - 533
1k0w_A_1651k0w   A     ZNZINC ION H - 171
1k0w_A_1651k0w   A     ZNZINC ION G - 172
1k0w_A_1651k0w   A     ZNZINC ION F - 174
1kgs_A_2121kgs   A     SCNTHIOCYANATE ION H - 213
1kgs_A_2121kgs   A     SCNTHIOCYANATE ION V - 221
1ko7_A_1981ko7   A     PO4PHOSPHATE ION E - 200
1ko7_A_1981ko7   A     PO4PHOSPHATE ION R - 202
1ofz_A_2861ofz   A     FULBETA-L-FUCOSE W - 292
1ofz_A_2861ofz   A     FULBETA-L-FUCOSE W - 298
1q0x_H_331q0x   H     PG4TETRAETHYLENE GLYCOL W - 33
1q0x_H_331q0x   H     PG4TETRAETHYLENE GLYCOL E - 35
1q0x_H_331q0x   H     PG4TETRAETHYLENE GLYCOL E - 50
1q7e_A_3581q7e   A     MSESELENOMETHIONINE Y - 369
1q7e_A_3581q7e   A     MSESELENOMETHIONINE L - 370
1q7e_A_3581q7e   A     MSESELENOMETHIONINE T - 371
1q7e_A_3581q7e   A     MSESELENOMETHIONINE V - 372
1r3s_A_991r3s   A     1CPCOPROPORPHYRIN I M - 100
1r3s_A_991r3s   A     1CPCOPROPORPHYRIN I G - 105
1r3s_A_991r3s   A     1CPCOPROPORPHYRIN I P - 106
1vju_A_421vju   A     MSESELENOMETHIONINE R - 56
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofz_A_2861ofz   A AC5FUL BINDING SITE FOR CHAIN AW - 292
1ofz_A_2861ofz   A AC5FUL BINDING SITE FOR CHAIN AW - 298

Clusters included in this Subclass
CLUSTER: HA.4.22