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Information on SUBCLASS 3.9.1
Subclass Accession number: 6196
Subclass: 3.9.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 11.7 +/- 18.9
Average RMSD (Å) : 0.692 +/- 0.275

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XXpXXXX
(φψ)-conformation: bbpaabb
Pattern: [afiktv]xx[ADGST][adgnpst][degs]xxxx
Conservation:-0.7400.075-0.2742.371-0.1080.901-0.181-0.789-0.135-1.120
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ffg_B_1861ffg   B188197VVKGADSLSAEEE-SS-EEExbxxaabbbb
1fvc_B_341fvc   B3746VRQAPGKGLEEEE-SSS-EEbbbxaaxxxb
1i1q_A_2921i1q   A295304FMQDNDFTLFEEE-SS-EEEbbbxaabbbb
1j19_A_51j19   A817RVTTMDAELEEEE-TT--EEbxbxaabbbx
1kqw_A_481kqw   A5261KTLSTFRNYEEEE-SS--EEbbbbaabbbb
1l0l_A_851l0l   A8897AYSTREHTAYEEE-SS-EEEbbbbaabbbb
1lpj_A_481lpj   A5261HTNSSLRNYFEEE-SS--EEbbbbaabbbb
1nc2_B_331nc2   B3746VRQSPGKGLEEEE-TTS-EEbbbxaabbxb
1opb_A_481opb   A5261KTNSTFRNYDEEE-SS--EEbbbbaabbbb
1plq_*_2241plq   -227236IRLSSEAPALEEE-SSS-EEbbbbaabxxb
1pyb_A_881pyb   A8897AASDGENLSVEEE-SS-EEEbxxxaNxxxx
1tvd_A_441tvd   A4857FYGDDSRSEGEEE-SS-EEEbbbbaabbbx
1vh9_A_271vh9   A2938TRLGDDVLEAEEE-SS-EEEabbxaabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i1q_A_2921i1q   A     TRPTRYPTOPHAN Y - 292
1i1q_A_2921i1q   A     TRPTRYPTOPHAN M - 293
1i1q_A_2921i1q   A     TRPTRYPTOPHAN F - 294
1kqw_A_481kqw   A     RTLRETINOL T - 51
1kqw_A_481kqw   A     RTLRETINOL K - 52
1kqw_A_481kqw   A     RTLRETINOL T - 53
1kqw_A_481kqw   A     RTLRETINOL L - 54
1kqw_A_481kqw   A     RTLRETINOL S - 55
1kqw_A_481kqw   A     RTLRETINOL F - 57
1kqw_A_481kqw   A     RTLRETINOL R - 58
1kqw_A_481kqw   A     RTLRETINOL N - 59
1kqw_A_481kqw   A     RTLRETINOL Y - 60
1kqw_A_481kqw   A     RTLRETINOL V - 62
1kqw_A_481kqw   A     RTLRETINOL F - 64
1nc2_B_331nc2   B     DOE(S)-2-(4-(2-(2-HYDROXYETHYLTHIO)-ACETAMIDO)-BENZYL)-1, 4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE H - 35
1nc2_B_331nc2   B     DOE(S)-2-(4-(2-(2-HYDROXYETHYLTHIO)-ACETAMIDO)-BENZYL)-1, 4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE W - 47
1nc2_B_331nc2   B     DOE(S)-2-(4-(2-(2-HYDROXYETHYLTHIO)-ACETAMIDO)-BENZYL)-1, 4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE V - 50
1opb_A_481opb   A     RETRETINAL T - 51
1opb_A_481opb   A     RETRETINAL T - 53
1opb_A_481opb   A     RETRETINAL N - 54
1opb_A_481opb   A     RETRETINAL S - 55
1opb_A_481opb   A     RETRETINAL F - 57
1opb_A_481opb   A     RETRETINAL R - 58
1opb_A_481opb   A     RETRETINAL N - 59
1opb_A_481opb   A     RETRETINAL Y - 60
1opb_A_481opb   A     RETRETINAL L - 62
1opb_A_481opb   A     RETRETINAL F - 64

Clusters included in this Subclass
CLUSTER: HA.4.44
CLUSTER: HA.5.139