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PDB code:

Information on SUBCLASS 4.1.3

Subclass Accession number: 6238 Subclass: 4.1.3 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 82 Average sequence ID (%) : 18.4 +/- 20.6 Average RMSD (Å) : 0.424 +/- 0.180 Consensus geometry d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a14_H_44	1a14	H	50	59	IFYPGNGDTS	EEETTTTEEE	bbbaaavxbb
1a3r_H_45	1a3r	H	50	59	RLDPANGYTK	EE-TTT--EE	bbxaaNvxbb
1a6w_H_345	1a6w	H	350	359	RIDPNSGGTK	EE-TTT--EE	bbxaaavxbb
1bfg_*_62	1bfg	-	65	74	IKGVSANRYL	EEETTTTEEE	bbxaaavbbx
1byu_A_38	1byu	A	38	47	KYVPTLGVEV	EEETTTTEEE	bxbaaavbbx
1c5c_H_45	1c5c	H	50	59	LIDPSNGRTN	EE-TTT--EE	bbxaaNvxbb
1cic_B_45	1cic	B	50	59	NIYPGSGDSN	EE-TTT--EE	bbxaaavxbb
1cr9_H_45	1cr9	H	50	59	WIDPENGNSE	EE-TTT--EE	bbxaaavxbb
1ct8_B_45	1ct8	B	50	59	WIYAGSGGTV	EEETTT--EE	bbxaaavxbb
1dlc_*_414	1dlc	-	426	435	QYNDQTDEAS	EEETTTTEEE	bbbaaalbxb
1dp4_A_388	1dp4	A	393	402	NYNGTSQELM	EE-TTT--EE	bbxaaavxbb
1dqg_A_8	1dqg	A	8	17	IYNEDHKRCV	EEETTTTEEE	bbbaaalbbx
1dvf_D_45	1dvf	D	50	59	RIDPANGNIQ	EE-TTT--EE	bbbaaavxbb
1dzb_A_45	1dzb	A	50	59	RIDPANGNTK	EE-TTT--EE	bbbaaavxbb
1dzk_A_38	1dzk	A	43	52	EFDDKESKVY	EEETTTTEEE	bxbaaalbbb
1e3m_A_143	1e3m	A	147	156	TLDISSGRFR	EE-TTT--EE	bbbaaNvxbb
1e4w_H_46	1e4w	H	50	59	EILPSNGRTN	EE-TTT--EE	bbbaaavxbb
1e6o_H_45	1e6o	H	50	59	YINPSSGYSN	EEETTTTEEE	bbbaaavxbb
1e9g_A_35	1e9g	A	35	44	YADKENNIFN	EEETTTTEEE	xabaaalbbx
1eap_B_45	1eap	B	50	59	YISPGNGDIK	EE-TTT--EE	bbxaaavxbb
1edh_A_163	1edh	A	164	173	TVNRDTGVIS	EE-TTT-EEE	bbxaaavxxb
1f00_I_803	1f00	I	804	813	SVDASSGQVT	EE-TTT-EEE	bbxaaavxbb
1f3d_H_44	1f3d	H	50	59	YIVPYSGGTT	EE-TTT--EE	bbxaaavxbb
1fgv_H_45	1fgv	H	50	59	GINPKNGGTS	EE-TTT--EE	bbbaaavxbb
1fvc_B_45	1fvc	B	50	59	RIYPTNGYTR	EE-TTT--EE	bbbaaavpbb
1g0s_A_59	1g0s	A	64	73	PFDPVRDEVV	EEETTTTEEE	wbbaaalbbb
1g72_A_392	1g72	A	392	401	SYDPESRTLY	EEETTTTEEE	bbbaaalbbb
1gt1_A_39	1gt1	A	44	53	VFDDEKGTVD	EEETTTTEEE	bbbaaavbbb
1h4i_A_399	1h4i	A	399	408	SYDPKRELFF	EEETTTTEEE	bbxaaalbxb
1h8n_A_176	1h8n	A	181	190	NIYPSDSYTN	EEETTTTEEE	bbbaaavxbb
1i31_A_341	1i31	A	343	352	KYKASENAIV	EEEGGGTEEE	bxbaaalbxb
1ijt_A_125	1ijt	A	128	137	IFGVASRFFV	EEETTTTEEE	bbxaaavbxx
1il1_A_45	1il1	A	50	59	WLDPENGDTE	EEETTTTEEE	bbbaaavxbb
1io1_A_220	1io1	A	221	230	KFDDTTGKYY	EEETTTTEEE	xxbaaavxbb
1iqd_B_45	1iqd	B	50	59	SFDPESGESI	EEETTTTEEE	bbbaaavxbb
1izn_A_86	1izn	A	87	96	FLDPRNKISF	EE-TTT-EEE	bbbaaavbbb
1jdp_A_383	1jdp	A	389	398	DYFGKEGRFE	EEETTTTEEE	bbbaaavbbb
1jpt_H_45	1jpt	H	50	59	LIDPEQGNTI	EE-TTT--EE	bbxaaavxbb
1jv5_B_345	1jv5	B	350	359	DIYPGSGITN	EE-TTT--EE	bbxaaavxbb
1k2d_B_35	1k2d	B	39	48	RFDSDVGEYR	EEETTTTEEE	bbbaaalbxb
1kb0_A_399	1kb0	A	399	408	SFNPQTGLVY	EEETTTTEEE	bbbaaavbbx
1kb5_H_45	1kb5	H	50	59	NIDPYYGGIS	EE-TTT--EE	bbbaaavxbb
1kv9_A_387	1kv9	A	387	396	SFNPGTGLVY	EEETTTTEEE	bbbaaavbbx
1l7i_H_46	1l7i	H	50	59	DVNPNSGGSI	EE-TTT--EE	bbxaaavxbb
1lbv_A_112	1lbv	A	117	126	VYNLATGDEY	EEETTT--EE	bbxaaavxbb
1lk3_H_45	1lk3	H	50	59	YINPNSGYTN	EE-TTT--EE	bbxaaavpbb
1lrw_A_399	1lrw	A	399	408	SYDPERKVFM	EEETTTTEEE	bbxaaalbbx
1m1h_A_116	1m1h	A	117	126	ITCKENKTEA	EEETTTTEEE	bbxaaavbbb
1ma3_A_119	1ma3	A	124	133	LDCLDCHETY	EEETTT--EE	bbxaaavxbb
1mex_H_45	1mex	H	50	59	YISPGNGDIK	EEETTTTEEE	bbbaaavxbb
1mfa_*_294	1mfa	-	300	309	AIYPGNSATF	EEETTTTEEE	bbbaaavxbb
1mju_H_45	1mju	H	50	59	NIYPGSSYTH	EEETTTTEEE	bbbaaavxbb
1mre_H_45	1mre	H	50	59	EIDPSDSYTN	EEETTTTEEE	bbxaaalxbb
1mvf_A_46	1mvf	A	50	59	AIFIDNGNTI	EEETTT--EE	bbxaaavxbb
1mvu_B_45	1mvu	B	50	59	RIDPANDNTK	EEETTTTEEE	bbbaaavxbb
1n4k_A_239	1n4k	A	242	251	LFHAEQEKFL	EEETTTTEEE	bxxaaavbxx
1n67_A_386	1n67	A	386	395	QIDKTNNTYR	EEETTTTEEE	bbbaaalbbb
1n9e_A_219	1n9e	A	219	228	LHDPATGATV	EE-TTT--EE	bxbaaavxbb
1nlb_H_45	1nlb	H	50	59	WVNTETGEPT	EE-TTT--EE	bbxaaavxbb
1op9_A_43	1op9	A	47	56	AIRSSDGTTY	EEETTTTEEE	bbbaaavxbb
1orv_A_128	1orv	A	134	142	IYDLNKRQL.	EEETTTTEE.	bbxaaalbx.
1oxd_A_149	1oxd	A	153	162	TADKQKNGIK	EEEGGGTEEE	bxbaaalbbb
1pa1_A_633	1pa1	A	633	642	MIFEDTNLKL	EEETTTTEEE	bbbaaalbbb
1pcv_A_82	1pcv	A	86	95	ALDQFSGLDF	EE-TTTSEEE	bxxaaavbbb
1pg7_X_45	1pg7	X	50	59	LVHPHNGAIT	EEETTTTEEE	bbxaaNvxbb
1pgu_A_25	1pgu	A	25	34	SYDPTTNAIA	EEETTTTEEE	bbbaaalbbb
1pj5_A_777	1pj5	A	778	787	AYGYTVAKPI	EEETTTTEEE	bxxaaalbxb
1pz4_A_39	1pz4	A	45	54	VMDLKNVKLV	EEETTTTEEE	bbxaaavbbb
1q0x_H_45	1q0x	H	50	59	EILPGSGDTI	EE-TTT--EE	bbbaaavxbb
1q0y_H_45	1q0y	H	50	59	EILPGSGDTI	EEETTTTEEE	bbbaaavxbb
1q1a_A_136	1q1a	A	141	150	CHCIGCGKVY	EEETTT--EE	bbxaaavpxb
1rhh_B_45	1rhh	B	50	59	GIIPIFGTSN	EEEGGGTEEE	bbbaaavxbb
1rz7_H_45	1rz7	H	50	59	LIDPEDADTM	EEETTTTEEE	bbxaaavxbb
1rzf_H_45	1rzf	H	50	59	GIIPIFGSSH	EEEGGGTEEE	bbbaaalbbb
1tet_H_44	1tet	H	50	59	WINTYSGVPT	EE-TTT--EE	bbxaaavxxb
1v74_A_656	1v74	A	658	667	YFNPNTMNVV	EE-TTT-EEE	bbbaaavxbb
1vge_H_46	1vge	H	51	60	WISAGTGNTK	EEETTT--EE	bbxaaavxbb
1wej_H_45	1wej	H	50	59	RIDPASGNTK	EE-TTT--EE	bbbaaavxbb
1yei_H_44	1yei	H	50	59	RIYPGTGSTY	EEETTTTEEE	bbbaaavxbb
2bbk_H_272	2bbk	H	273	282	AYHRALDRIY	EEETTTTEEE	bbxaaalbbb
2jel_H_45	2jel	H	50	59	LISTYSGYTN	EE-TTT--EE	bbxaaavxbb
2pcp_B_44	2pcp	B	50	59	YIYPNNGGNG	EEETTTTEEE	bbbaaavpbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a6w_H_345	1a6w	H	NIP4-HYDROXY-5-IODO-3-NITROPHENYLACETYL-EPSILON-AMINOCAPROIC ACID ANION	W - 347
1a6w_H_345	1a6w	H	NIP4-HYDROXY-5-IODO-3-NITROPHENYLACETYL-EPSILON-AMINOCAPROIC ACID ANION	R - 350
1a6w_H_345	1a6w	H	NIP4-HYDROXY-5-IODO-3-NITROPHENYLACETYL-EPSILON-AMINOCAPROIC ACID ANION	K - 359
1c5c_H_45	1c5c	H	TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID	W - 47
1c5c_H_45	1c5c	H	TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID	L - 50
1ct8_B_45	1ct8	B	TAA[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]-PHOSPHONIC ACID MONO-[2-(2,2-DICHLORO-1-HYDROXY-ETHYLAMINO)-3-HYDROXY-1-(4-NITRO-PHENYL)-PROPYL] ESTER	W - 47
1ct8_B_45	1ct8	B	TAA[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]-PHOSPHONIC ACID MONO-[2-(2,2-DICHLORO-1-HYDROXY-ETHYLAMINO)-3-HYDROXY-1-(4-NITRO-PHENYL)-PROPYL] ESTER	W - 50
1ct8_B_45	1ct8	B	TAA[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]-PHOSPHONIC ACID MONO-[2-(2,2-DICHLORO-1-HYDROXY-ETHYLAMINO)-3-HYDROXY-1-(4-NITRO-PHENYL)-PROPYL] ESTER	G - 56
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 395
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 396
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 397
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 398
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 399
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 400
1dvf_D_45	1dvf	D	ZNZINC ION	R - 50
1dvf_D_45	1dvf	D	ZNZINC ION	D - 52
1dzk_A_38	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	M - 39
1dzk_A_38	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	I - 42
1dzk_A_38	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	L - 53
1dzk_A_38	1dzk	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	F - 55
1e3m_A_143	1e3m	A	MSESELENOMETHIONINE	F - 143
1e3m_A_143	1e3m	A	MSESELENOMETHIONINE	G - 144
1e3m_A_143	1e3m	A	MSESELENOMETHIONINE	Y - 145
1e3m_A_143	1e3m	A	MSESELENOMETHIONINE	F - 155
1e3m_A_143	1e3m	A	MSESELENOMETHIONINE	R - 156
1e3m_A_143	1e3m	A	MSESELENOMETHIONINE	L - 157
1e3m_A_143	1e3m	A	MSESELENOMETHIONINE	S - 158
1e9g_A_35	1e9g	A	MNMANGANESE (II) ION	E - 48
1e9g_A_35	1e9g	A	PO4PHOSPHATE ION	E - 48
1eap_B_45	1eap	B	HEPPHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE	W - 47
1f3d_H_44	1f3d	H	TPM2-(4-AMINOBENZYLAMINO)-3,4,5,6-TETRAHYDROPYRIDINIUM	W - 47
1gt1_A_39	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	F - 40
1gt1_A_39	1gt1	A	ANCANTHRACEN-1-YLAMINE	F - 40
1gt1_A_39	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	F - 54
1gt1_A_39	1gt1	A	ANCANTHRACEN-1-YLAMINE	F - 54
1gt1_A_39	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	F - 56
1gt1_A_39	1gt1	A	ANCANTHRACEN-1-YLAMINE	F - 56
1h8n_A_176	1h8n	A	GOLGLYCEROL	T - 189
1h8n_A_176	1h8n	A	GOLGLYCEROL	Y - 191
1ma3_A_119	1ma3	A	ZNZINC ION	C - 126
1ma3_A_119	1ma3	A	ZNZINC ION	L - 127
1ma3_A_119	1ma3	A	ZNZINC ION	D - 128
1ma3_A_119	1ma3	A	ZNZINC ION	C - 129
1ma3_A_119	1ma3	A	ZNZINC ION	H - 130
1ma3_A_119	1ma3	A	ZNZINC ION	E - 131
1ma3_A_119	1ma3	A	ZNZINC ION	Y - 133
1mex_H_45	1mex	H	RAC4-(2-DIMETHYLCARBAMOYL-PHENYLCARBAMOYLOXYMETHYL)-BENZOIC ACID	W - 47
1mfa_*_294	1mfa	*	ABEABEQUOSE	W - 297
1mfa_*_294	1mfa	*	ABEABEQUOSE	A - 300
1mfa_*_294	1mfa	*	MMAO1-METHYL-MANNOSE	N - 305
1mfa_*_294	1mfa	*	MMAO1-METHYL-MANNOSE	A - 307
1mfa_*_294	1mfa	*	GALD-GALACTOSE	F - 309
1mfa_*_294	1mfa	*	MMAO1-METHYL-MANNOSE	F - 309
1mfa_*_294	1mfa	*	ABEABEQUOSE	F - 309
1oxd_A_149	1oxd	A	NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE	N - 149
1oxd_A_149	1oxd	A	NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE	V - 150
1oxd_A_149	1oxd	A	NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE	F - 165
1oxd_A_149	1oxd	A	NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE	I - 167
1pa1_A_633	1pa1	A	MGMAGNESIUM ION	K - 641
1pz4_A_39	1pz4	A	PLMPALMITIC ACID	M - 46
1pz4_A_39	1pz4	A	PLMPALMITIC ACID	L - 48
1q0x_H_45	1q0x	H	PG4TETRAETHYLENE GLYCOL	E - 50
1q0y_H_45	1q0y	H	MOI(7R,7AS,12BS)-3-METHYL-2,3,4,4A,7,7A-HEXAHYDRO-1H-4, 12-METHANO[1]BENZOFURO[3,2-E]ISOQUINOLINE-7,9-DIOL	W - 47
1q0y_H_45	1q0y	H	MOI(7R,7AS,12BS)-3-METHYL-2,3,4,4A,7,7A-HEXAHYDRO-1H-4, 12-METHANO[1]BENZOFURO[3,2-E]ISOQUINOLINE-7,9-DIOL	E - 50
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	C - 143
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	I - 144
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	G - 145
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	C - 146
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	G - 147
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	K - 148
1rzf_H_45	1rzf	H	GOLGLYCEROL	L - 45
1rzf_H_45	1rzf	H	IOH2-PROPANOL, ISOPROPANOL	L - 45
1rzf_H_45	1rzf	H	GOLGLYCEROL	E - 46
1rzf_H_45	1rzf	H	GOLGLYCEROL	W - 47
1v74_A_656	1v74	A	1PEPENTAETHYLENE GLYCOL	Y - 658
1v74_A_656	1v74	A	1PEPENTAETHYLENE GLYCOL	I - 669
1yei_H_44	1yei	H	PGGPARA-NITROPHENYLPHOSPHONOBUTANOYL-GLYCINE	W - 47
1yei_H_44	1yei	H	PGGPARA-NITROPHENYLPHOSPHONOBUTANOYL-GLYCINE	R - 50
2pcp_B_44	2pcp	B	1PC1-(PHENYL-1-CYCLOHEXYL)PIPERIDINE	W - 47
2pcp_B_44	2pcp	B	1PC1-(PHENYL-1-CYCLOHEXYL)PIPERIDINE	Y - 50

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1e9g_A_35	1e9g	A	ASAACTIVE SITE A.	E - 48
1gt1_A_39	1gt1	A	ANAANC BINDING SITE FOR CHAIN A	F - 56

Clusters included in this Subclass

CLUSTER: HA.3.24

CLUSTER: HA.4.15

CLUSTER: HA.5.6

CLUSTER: HA.6.12

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