Logo
Information on SUBCLASS 4.1.9
Subclass Accession number: 6244
Subclass: 4.1.9 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 9.4 +/- 11.3
Average RMSD (Å) : 0.471 +/- 0.127

Consensus geometry
d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: hXXXpXpX
(φψ)-conformation: bbaaalbb
Pattern: [ciltv]xxxxx[adeknq][hknrst][adegknqr][aekrst]xxx
Conservation:1.213-0.343-1.0580.694-0.954-1.4831.0880.3540.2621.6460.306-0.744-0.983
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1at0_*_3301at0   -331343VSVWQPESQKLTFEEEEETTTTEEEEbxbxbaaalbbbb
1d2k_A_3311d2k   A331343QVTELEDIAASYSEEEEETTTTEEEExxbbbaaalbbbb
1d8i_A_4521d8i   A459471VSYIHNDSCTRIDEEEEEGGGTEEEEbbbbbaaalbbbb
1ebf_A_2831ebf   A288300IGKVDVATKSVSVEEEEETTTTEEEEbbbbbaaalbbbb
1epf_A_1661epf   A170182CEGRILARGEINFEEEEEGGGTEEEExbbbbaaavxbbb
1euo_A_501euo   A5567LYHYNANKKTSFYEEEEETTTTEEEEbbbbxaaalbbbb
1g8k_B_1041g8k   B106118LLRYDAASDALTAEEEEETTTTEEEExbbbbaaavxbbx
1h4u_A_4211h4u   A429441HSYVVMNHGRSYTEEEEETTTTEEEEbbbbbaaalxbbb
1h6l_A_1281h6l   A131143IYAIDGKNGTLQSEEEEETTTTEEEEbbxxbaaavbbbx
1jj2_S_591jj2   S6274VINVDLDKAVIHVEEEEETTTTEEEExabbbaaalbbbb
1jyo_A_811jyo   A8193TLAYIDAAETLLLEEEEEGGGTEEEEbxbbbaaalbxbx
1kij_A_2021kij   A203215LVFQDRQHGKEEVEEEEEGGGTEEEEbbbbbaaalbbbb
1ni9_A_3001ni9   A305317TLLIRGKSRTIRREEEEETTTTEEEEbxbbbaaalbbbb
1nrg_A_1261nrg   A129141LVFYWEPLNRQVREEEEEGGGTEEEEbbbbbaaalbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1at0_*_3301at0   *     MSESELENOMETHIONINE S - 332
1at0_*_3301at0   *     MSESELENOMETHIONINE L - 341
1at0_*_3301at0   *     MSESELENOMETHIONINE F - 343
1euo_A_501euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 53
1euo_A_501euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 55
1euo_A_501euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 56
1euo_A_501euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 57
1euo_A_501euo   A     NH3AMMONIA H - 57
1euo_A_501euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 59
1euo_A_501euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 66
1euo_A_501euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 67
1euo_A_501euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 68
1nrg_A_1261nrg   A     SEO2-MERCAPTOETHANOL P - 135
1nrg_A_1261nrg   A     SEO2-MERCAPTOETHANOL L - 136

Clusters included in this Subclass
CLUSTER: HA.3.62
CLUSTER: HA.4.54
CLUSTER: HA.5.57