Information on SUBCLASS 4.1.9 |
Subclass Accession number: 6244
Subclass: 4.1.9 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 14 Average sequence ID (%) : 9.4 +/- 11.3 Average RMSD (Å) : 0.471 +/- 0.127 Consensus geometry
|
Consensus Sequence: | hXXXpXpX |
(φψ)-conformation: | bbaaalbb |
Pattern: | [ciltv] | x | x | x | x | x | [adeknq] | [hknrst] | [adegknqr] | [aekrst] | x | x | x |
Conservation: | 1.213 | -0.343 | -1.058 | 0.694 | -0.954 | -1.483 | 1.088 | 0.354 | 0.262 | 1.646 | 0.306 | -0.744 | -0.983 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1at0_*_330 | 1at0 | - | 331 | 343 | VSVWQPESQKLTF | EEEEETTTTEEEE | bxbxbaaalbbbb |
1d2k_A_331 | 1d2k | A | 331 | 343 | QVTELEDIAASYS | EEEEETTTTEEEE | xxbbbaaalbbbb |
1d8i_A_452 | 1d8i | A | 459 | 471 | VSYIHNDSCTRID | EEEEEGGGTEEEE | bbbbbaaalbbbb |
1ebf_A_283 | 1ebf | A | 288 | 300 | IGKVDVATKSVSV | EEEEETTTTEEEE | bbbbbaaalbbbb |
1epf_A_166 | 1epf | A | 170 | 182 | CEGRILARGEINF | EEEEEGGGTEEEE | xbbbbaaavxbbb |
1euo_A_50 | 1euo | A | 55 | 67 | LYHYNANKKTSFY | EEEEETTTTEEEE | bbbbxaaalbbbb |
1g8k_B_104 | 1g8k | B | 106 | 118 | LLRYDAASDALTA | EEEEETTTTEEEE | xbbbbaaavxbbx |
1h4u_A_421 | 1h4u | A | 429 | 441 | HSYVVMNHGRSYT | EEEEETTTTEEEE | bbbbbaaalxbbb |
1h6l_A_128 | 1h6l | A | 131 | 143 | IYAIDGKNGTLQS | EEEEETTTTEEEE | bbxxbaaavbbbx |
1jj2_S_59 | 1jj2 | S | 62 | 74 | VINVDLDKAVIHV | EEEEETTTTEEEE | xabbbaaalbbbb |
1jyo_A_81 | 1jyo | A | 81 | 93 | TLAYIDAAETLLL | EEEEEGGGTEEEE | bxbbbaaalbxbx |
1kij_A_202 | 1kij | A | 203 | 215 | LVFQDRQHGKEEV | EEEEEGGGTEEEE | bbbbbaaalbbbb |
1ni9_A_300 | 1ni9 | A | 305 | 317 | TLLIRGKSRTIRR | EEEEETTTTEEEE | bxbbbaaalbbbb |
1nrg_A_126 | 1nrg | A | 129 | 141 | LVFYWEPLNRQVR | EEEEEGGGTEEEE | bbbbbaaalbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1at0_*_330 | 1at0 | * | MSESELENOMETHIONINE | S - 332 |
1at0_*_330 | 1at0 | * | MSESELENOMETHIONINE | L - 341 |
1at0_*_330 | 1at0 | * | MSESELENOMETHIONINE | F - 343 |
1euo_A_50 | 1euo | A | HEMPROTOPORPHYRIN IX CONTAINING FE | E - 53 |
1euo_A_50 | 1euo | A | HEMPROTOPORPHYRIN IX CONTAINING FE | L - 55 |
1euo_A_50 | 1euo | A | HEMPROTOPORPHYRIN IX CONTAINING FE | Y - 56 |
1euo_A_50 | 1euo | A | HEMPROTOPORPHYRIN IX CONTAINING FE | H - 57 |
1euo_A_50 | 1euo | A | NH3AMMONIA | H - 57 |
1euo_A_50 | 1euo | A | HEMPROTOPORPHYRIN IX CONTAINING FE | N - 59 |
1euo_A_50 | 1euo | A | HEMPROTOPORPHYRIN IX CONTAINING FE | F - 66 |
1euo_A_50 | 1euo | A | HEMPROTOPORPHYRIN IX CONTAINING FE | Y - 67 |
1euo_A_50 | 1euo | A | HEMPROTOPORPHYRIN IX CONTAINING FE | N - 68 |
1nrg_A_126 | 1nrg | A | SEO2-MERCAPTOETHANOL | P - 135 |
1nrg_A_126 | 1nrg | A | SEO2-MERCAPTOETHANOL | L - 136 |
Clusters included in this Subclass |
CLUSTER: HA.3.62 |
CLUSTER: HA.4.54 |
CLUSTER: HA.5.57 |