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Information on SUBCLASS 4.1.13
Subclass Accession number: 6248
Subclass: 4.1.13 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 8.2 +/- 9.8
Average RMSD (Å) : 0.812 +/- 0.426

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: hpXXppXh
(φψ)-conformation: bbaaalbp
Pattern: xx[ipvy]xxxx[HVWY][adnr]x[agstv][ekrsty][DEGKRS][AEGKRS][fpvy]x[acflw]
Conservation:-0.567-0.3950.168-1.177-1.034-0.480-0.0732.9990.407-1.1320.656-0.1900.6760.945-0.040-0.736-0.029
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoc_A_1431aoc   A145161SVVRLVTYNLEKDGFLCEEEEEEEEETTTTEEEEbbbbbxbbxaaalbxbx
1ckm_A_1261ckm   A127143IFDGELCVDIVEKKFAFEEEEEEEEETTTTEEEEbbbbbxbbxaaalbxbb
1jj2_A_391jj2   A4056GTVVDIEHDPARSAPVAEEEEEEEEETTTTEEEEbbxabbbxbaaalbwbb
1mp2_A_561mp2   A5672NIPMVYQYRHTYGRRLWEEEEEEEEETTTTEEEEbbxbbbbxbaaavbxbx
1set_A_3291set   A329345RQVDIEVYLPSEGRYREEEEEEEEEEGGGTEEEEbbbxbbbxbaaalbxbp
1vhz_A_591vhz   A5975HLILIREYAVGTESYELEEEEEEEEETTTTEEEEbxbbbbbxbaaalbxxb
2rhe_*_852rhe   -85101ADYYCAAWNDSLDEPGFEEEEEEEEETTTTEEEEbbbbbbbxbaaavbxbb
2scu_B_1042scu   B107123ELYLGAVVDRSSRRVVFEEEEEEEEETTTTEEEEbbbbbbbxxaaavbxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ckm_A_1261ckm   A     GTPGUANOSINE-5'-TRIPHOSPHATE D - 129
1ckm_A_1261ckm   A     GTPGUANOSINE-5'-TRIPHOSPHATE G - 130
1ckm_A_1261ckm   A     GTPGUANOSINE-5'-TRIPHOSPHATE E - 131
1ckm_A_1261ckm   A     GTPGUANOSINE-5'-TRIPHOSPHATE F - 146
1set_A_3291set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE Q - 330
1set_A_3291set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE D - 332
1set_A_3291set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE E - 345
1set_A_3291set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE T - 346
1set_A_3291set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE H - 347
1set_A_3291set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE S - 348
1set_A_3291set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE C - 349
1set_A_3291set   A     SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE S - 350

Clusters included in this Subclass
CLUSTER: HA.3.72
CLUSTER: HA.5.74