Information on SUBCLASS 4.1.15 |
Subclass Accession number: 6250
Subclass: 4.1.15 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 7.5 +/- 10.4 Average RMSD (Å) : 0.233 +/- 0.052 Consensus geometry
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Consensus Sequence: | XXXpXpXh |
(φψ)-conformation: | bpaaalbb |
Pattern: | [klmv] | [CHNS] | x | [ehqy] | [cfkmt] | [knt] | x | [CFVY] |
Conservation: | -0.089 | 0.929 | -0.324 | 0.740 | -1.239 | 0.418 | -1.573 | 1.138 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dqg_A_47 | 1dqg | A | 48 | 55 | MSVAFKLC | EETTTTEE | bxaaalbb |
1e9g_A_106 | 1e9g | A | 106 | 113 | SHPETKAV | EETTTTEE | xxaaalbx |
1fn9_A_48 | 1fn9 | A | 50 | 57 | VCMHCLGV | EETTTTEE | bxaaavxx |
1jlx_A_210 | 1jlx | A | 213 | 220 | KSNYMNKF | EETTTTEE | bxaaavbx |
1jlx_A_255 | 1jlx | A | 259 | 266 | LNMQKTWF | EETTTTEE | xxaaalbx |
1qxm_A_196 | 1qxm | A | 200 | 207 | KCQENNRY | EETTTTEE | xxaaalbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1fn9_A_48 | 1fn9 | A | ZNZINC ION | C - 51 |
1fn9_A_48 | 1fn9 | A | ZNZINC ION | M - 52 |
1fn9_A_48 | 1fn9 | A | ZNZINC ION | H - 53 |
1fn9_A_48 | 1fn9 | A | ZNZINC ION | C - 54 |
1fn9_A_48 | 1fn9 | A | ZNZINC ION | L - 55 |
1fn9_A_48 | 1fn9 | A | ZNZINC ION | G - 56 |
1fn9_A_48 | 1fn9 | A | ZNZINC ION | V - 58 |
1jlx_A_255 | 1jlx | A | GALD-GALACTOSE | M - 261 |
1jlx_A_255 | 1jlx | A | GALD-GALACTOSE | Q - 262 |
1jlx_A_255 | 1jlx | A | GALD-GALACTOSE | K - 263 |
1jlx_A_255 | 1jlx | A | GALD-GALACTOSE | T - 264 |
1jlx_A_255 | 1jlx | A | NGAN-ACETYL-D-GALACTOSAMINE | T - 264 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1jlx_A_255 | 1jlx | A | S1CARBOHYDRATE BINDING SITE. | M - 261 |
1jlx_A_255 | 1jlx | A | S1CARBOHYDRATE BINDING SITE. | Q - 262 |
Clusters included in this Subclass |
CLUSTER: HA.3.230 |
CLUSTER: HA.4.122 |