Information on SUBCLASS 4.2.1 |
Subclass Accession number: 6265
Subclass: 4.2.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 127 Average sequence ID (%) : 8.6 +/- 11.9 Average RMSD (Å) : 0.667 +/- 0.329 Consensus geometry
|
Consensus Sequence: | XXXpppXX |
(φψ)-conformation: | bbabaabb |
Pattern: | x | x | x | x | x | [adegknrst] | [dehknpqrst] | [cdehknqrstwy] | x | x | x | x | x |
Conservation: | -1.000 | -0.332 | -0.428 | -1.084 | 0.053 | 2.079 | 1.233 | 0.960 | -0.695 | -0.866 | -0.696 | -0.222 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a0j_A_40 | 1a0j | A | 43 | 54 | GGSLISSTWVVS. | EEEESSSSEEEE. | xbbxabaabbbb. |
1a0t_P_335 | 1a0t | P | 343 | 355 | GTTPLSENWSVAP | EEEESSSSEEEEE | bbbxabaabbbbw |
1a1n_A_186 | 1a1n | A | 190 | 202 | THHPVSDHEATLR | EEEE-SSSEEEEE | bbbpabaabbbbb |
1a7t_A_11 | 1a7t | A | 12 | 24 | SITQLSDKVYTYV | EEEE-SSSEEEEE | bbbxabaabbbbb |
1a7t_A_5 | 1a7t | A | 5 | 15 | ..VKISDDISITQ | ..EE-SSSEEEEE | ..bxabaabbbbx |
1abr_A_51 | 1abr | A | 54 | 66 | VELSNSDTESIEV | EEEESSSSSEEEE | bxbxabaaxebbb |
1agd_A_186 | 1agd | A | 190 | 202 | THHPISDHEATLR | EEEE-SSSEEEEE | bbbpabaabbbbb |
1agj_A_55 | 1agj | A | 58 | 69 | TGVLIGKNTVLT. | EEEE-SSSEEEE. | bbbxabaabbbb. |
1az9_*_61 | 1az9 | - | 63 | 75 | VLIKSDDTHNHSV | EEEE-SSS-EEEE | bbbbabaabbbbb |
1bd2_E_65 | 1bd2 | E | 66 | 78 | NVSRSTTEDFPLR | EE--SSSSB--EE | bbbbabaabbxxx |
1bdf_A_13 | 1bdf | A | 15 | 27 | DIEQVSSTHAKVT | EEEESSSSEEEEE | bbbxabaabbbxb |
1bqy_A_39 | 1bqy | A | 43 | 54 | GGTLINQDWVVT. | EEEE-SSSEEEE. | bbbxabaabbbb. |
1cdt_A_2 | 1cdt | A | 2 | 13 | KCNKLIPIAYKT. | EEE-SSTT-EEE. | bbxxaxaabbbx. |
1csk_A_35 | 1csk | A | 39 | 51 | VAVTKDPNWYKAK | EEE-SSTTEEEEE | abbbabaabbbbb |
1cu1_A_113 | 1cu1 | A | 115 | 127 | PVRRRGDSRGSLL | EEEE-SSSEEEEE | wbxxabaNbbbxa |
1cwv_A_950 | 1cwv | A | 951 | 963 | YWVKKTSTDFETM | EEEESSSS-EEEE | bxbbabaabbbbb |
1cza_N_158 | 1cza | N | 158 | 168 | .CQQSKIDEAIL. | .EE-SSTT--EE. | .bxbabaabbxp. |
1czy_A_381 | 1czy | A | 381 | 391 | ..FYTSRYGYKMC | ..EESSTTS-EEE | ..bbabaaxxbbb |
1d3b_B_40 | 1d3b | B | 50 | 62 | KIKPKNSKQAERE | EE--SSTTS--EE | bbbxaxaabxpbb |
1ddw_A_68 | 1ddw | A | 68 | 78 | ..TKTSQKFGQWA | ..EE-SSSEEEEE | ..bxabaabbbbx |
1dle_A_40 | 1dle | A | 43 | 54 | MGAVVSEYFVLT. | EEEE-SSSEEEE. | bbbxabaabbxb. |
1dqg_A_39 | 1dqg | A | 39 | 49 | .FRWVSDSQIMS. | .EEESSSS-EEE. | .bbxabaabbbx. |
1dx5_I_359 | 1dx5 | I | 359 | 371 | QCQPLDQTSYLCV | EEEE-SSS-EEEE | bbbxabaabbbxb |
1dzr_A_3 | 1dzr | A | 4 | 16 | VIKTAIPDVLILE | EEE-SSTT-EEEE | bbxxabaaxbxbb |
1e54_A_269 | 1e54 | A | 278 | 290 | YVHNLSKRTALYG | EEEESSSSEEEEE | bbbxabaabbbbb |
1eaq_A_63 | 1eaq | A | 63 | 72 | .VRTDSPNFLS.. | .EE-SSTTEEE.. | .bxbabaabbb.. |
1eax_A_39 | 1eax | A | 43 | 54 | GASLISPNWLVS. | EEEE-SSSEEEE. | bbbxabaabbbb. |
1eep_A_33 | 1eep | A | 33 | 41 | ..TQLTKNISL.. | ..EESSSS-EE.. | ..bbabaabbb.. |
1ekb_B_39 | 1ekb | B | 43 | 54 | GASLVSRDWLVS. | EEEE-SSSEEEE. | bbbxabaabbbb. |
1eo9_B_447 | 1eo9 | B | 447 | 457 | YPWRNRINEWR.. | EEESSSTTEEE.. | bwbxaxaaxbx.. |
1eq9_A_39 | 1eq9 | A | 43 | 54 | GASILDNNNVLT. | EEEE-SSSEEEE. | xbbxabaabbxb. |
1ew3_A_119 | 1ew3 | A | 123 | 135 | YLVNFDKDRPFQL | EEEE--SS--EEE | bbbbaxaabwbbb |
1f1s_A_736 | 1f1s | A | 737 | 749 | GSVKLNDHFALAA | EEEESSSSEEEEE | ebbbabaabbbbb |
1f2f_A_212 | 1f2f | A | 212 | 220 | ..FYIWSRTQF.. | ..EESSTTSEE.. | ..bbabaabbb.. |
1fep_A_654 | 1fep | A | 661 | 673 | ATWDVTKNVSLTG | EEEE-SSSEEEEE | bbbxabaabbbbb |
1ff4_A_23 | 1ff4 | A | 27 | 39 | RWHYVTPKNYDII | EEEESSSS-EEEE | bxxxabaabbbxb |
1fjs_A_40 | 1fjs | A | 43 | 54 | GGTILSEFYILT. | EEEE-SSSEEEE. | bbbxabaabbbb. |
1fmk_*_212 | 1fmk | - | 212 | 220 | ..FYITSRTQF.. | ..EESSTTSEE.. | ..bbabaabbb.. |
1fzc_B_223 | 1fzc | B | 225 | 237 | YLIQPDSSVKPYR | EEE-S-TTS--EE | bxbbwbaaxxwbx |
1g0u_G_67 | 1g0u | G | 67 | 78 | .IFCISRTIGMVV | .EEE-SSS-EEEE | .bbxabaabbbbb |
1g8k_B_23 | 1g8k | B | 24 | 36 | SFTYPDTSSPCVA | EEE-SSTTSEEEE | xbbbwbaabxbbb |
1gg6_B_40 | 1gg6 | B | 43 | 54 | GGSLINENWVVT. | EEEESSSSEEEE. | bbbxabaabbbb. |
1goj_A_30 | 1goj | A | 30 | 40 | .VTFQGPDTCTV. | .EEE-STTEEEE. | .bbbaxaabbbb. |
1gpi_A_190 | 1gpi | A | 190 | 198 | ..TETGSNTGT.. | ..EE-SSS-EE.. | ..bxabaabbb.. |
1gux_B_742 | 1gux | B | 742 | 750 | ..VLIKEEEYD.. | ..EE-SSS-EE.. | ..bxaFaaxbb.. |
1h0j_A_2 | 1h0j | A | 2 | 13 | KCNKLVPLFYKT. | EEE-SSTT-EEE. | bbxxabaabbbx. |
1h3g_A_44 | 1h3g | A | 49 | 61 | TTRVPNANYLFVD | EE--SSTTB-EEE | bbbbaxaabbbbb |
1h8d_H_38 | 1h8d | H | 43 | 54 | GASLISDRWVLT. | EEEE-SSSEEEE. | xbbxabaabbbb. |
1hg4_A_363 | 1hg4 | A | 363 | 373 | .QLFLNQSFSYH. | .EEESSSS-EEE. | .bbxabaabbbx. |
1hxx_A_287 | 1hxx | A | 299 | 311 | ATYYFNKNMSTYV | EEEESSSSEEEEE | bbbxabaabbbbb |
1hxx_A_40 | 1hxx | A | 47 | 59 | GETQINSDLTGYG | EEEESSSSEEEEE | bbbxabaabbbbb |
1hyo_A_177 | 1hyo | A | 178 | 190 | GQMRPDNSKPPVY | EEE-S-TTS--EE | exbbabaabwxbb |
1i4f_A_186 | 1i4f | A | 190 | 202 | THHAVSDHEATLR | EEEESSSSEEEEE | bbbxabaabbbbb |
1i7a_A_67 | 1i7a | A | 67 | 78 | .FTKTSQKFGQWA | .EEESSSSEEEEE | .bbxabaNbbbbx |
1i7p_A_155 | 1i7p | A | 156 | 168 | FAIRADKKSNPVV | EEE-SSTTS--EE | bbbxabaabxxbx |
1ig8_A_161 | 1ig8 | A | 161 | 171 | .ASQNKINEGIL. | .EE-SBTT--EE. | .bbbabaabbxx. |
1isu_A_28 | 1isu | A | 28 | 40 | FVPGASPTAAGGC | EE--SSTTS-BEE | xbpxabaaxxbbb |
1j0h_A_15 | 1j0h | A | 15 | 26 | .AYAYDSETLHLR | .EEESSSS-EEEE | .bbxabaabbbbb |
1j23_A_39 | 1j23 | A | 39 | 49 | ..YIISEDVAIER | ..EE-SSSEEEEE | ..bbabaaxbbbx |
1j8h_E_65 | 1j8h | E | 66 | 78 | SVSREKKERFSLI | EEE-SSTTB-EEE | bbbbabaabbxbb |
1jcv_*_14 | 1jcv | - | 18 | 30 | KFEQASESEPTTV | EEE-SSTTS-EEE | bbbbabaaxxxxb |
1jeh_A_116 | 1jeh | A | 117 | 129 | NGSFEDETKIRVT | EEEESSSSEEEEE | xbbxabaNbbxxx |
1jey_A_257 | 1jey | A | 259 | 271 | LKLKLNKDIVISV | EEEESSSS-EEEE | bxbxabaaxbbbb |
1jey_B_389 | 1jey | B | 393 | 405 | VRYAYDKRANPQV | EEEESSSSS--EE | bbbbabaaxxxbb |
1jg1_A_179 | 1jg1 | A | 187 | 199 | IPVGSYHLWQELL | EEE-SSSS-EEEE | bwbbabaabbbxb |
1jm1_A_78 | 1jm1 | A | 80 | 92 | FFAYPLTDEPCFL | EEE-SSTT-EEEE | xbbbwbaabwbbx |
1jnp_A_18 | 1jnp | A | 18 | 28 | .LWIWEKHVYLD. | .EEE-SSS-EEE. | .bxxabaabbbb. |
1jo8_A_24 | 1jo8 | A | 27 | 39 | NIEFVDDDWWLGE | EEE--SSSEEEEE | lxbxabaabbbbb |
1jou_B_39 | 1jou | B | 43 | 54 | GASLISDRWVLT. | EEEESSSSEEEE. | bbbxabaNbbbb. |
1jss_A_99 | 1jss | A | 104 | 116 | VLEHFEENCCVMR | EEEE-STTEEEEE | xabbabaabbbbb |
1jyd_A_53 | 1jyd | A | 59 | 71 | GRVRLLNNWDVCA | EEEE-SSS-EEEE | exbxabaabbbxb |
1k8d_A_186 | 1k8d | A | 190 | 202 | THHPRSYGAVTLR | EEEE-SSSEEEEE | bbbxNbaabbbxb |
1k8k_F_51 | 1k8k | F | 51 | 63 | VTISRNEKEKVLI | EEEESSSS-EEEE | bbbbabaaxbbbb |
1kli_H_39 | 1kli | H | 43 | 54 | GGTLINTIWVVS. | EEEE-SSSEEEE. | bbbxabaabbbb. |
1kzf_A_158 | 1kzf | A | 161 | 173 | KEAFLTEKERIYL | EEEESSSS-EEEE | bxbbabaabbbbx |
1lck_A_191 | 1lck | A | 191 | 199 | ..FYISPRITF.. | ..EESSTTSEE.. | ..bbabaabbb.. |
1lfd_A_63 | 1lfd | A | 65 | 76 | LLQIISEDHKLK. | EEEESSSS-EEE. | bbxxabaabbxx. |
1lp9_F_179 | 1lp9 | F | 179 | 189 | ..YKESNYSYALS | ..EESSSS-EEEE | ..bxabaabbbbb |
1lva_A_563 | 1lva | A | 563 | 573 | .LVKINDEFYWH. | .EEESSSSBEEE. | .bbxabaabbbx. |
1m50_A_77 | 1m50 | A | 86 | 98 | DIANETKERRISV | EEEESSSSEEEEE | bbbxabaabbbbb |
1m9u_A_38 | 1m9u | A | 43 | 54 | GASLLSSTSALS. | EEEE-SSSEEEE. | xbbxabaabbbb. |
1mkf_A_339 | 1mkf | A | 341 | 353 | LVEGQSQNVLQVR | EEE-SSTTEEEEE | bbxxabaabbbbb |
1n6a_A_267 | 1n6a | A | 267 | 276 | ..LSLDEETVID. | ..EE-SSS-EEE. | ..bxabaabbxb. |
1n7v_A_474 | 1n7v | A | 479 | 491 | AATFMDVENPDEI | EE--SSTTS--EE | gxbbabaaxxpbx |
1nbw_A_468 | 1nbw | A | 468 | 479 | LAKVESLFSIRH. | EEEE-SSSEEEE. | bbbxabaabbbp. |
1ncf_A_102 | 1ncf | A | 103 | 115 | YRHYWSENLFQCF | EEEESSSS-EEEE | bxbxabaabbbxb |
1nh8_A_238 | 1nh8 | A | 239 | 251 | IAPLADPDWVAIR | EEE-SSTTEEEEE | bbxxaxaabbbbb |
1ni4_A_346 | 1ni4 | A | 347 | 359 | EVRGANQWIKFKS | EEE-SSTT-EEEE | xbxbabaabbbxb |
1nqe_A_197 | 1nqe | A | 206 | 218 | LEHNFTDAWSGFV | EEEESSSSEEEEE | bbbxabaNxbbbb |
1nqe_A_544 | 1nqe | A | 551 | 563 | VAYPVTSHLTVRG | EEEESSSSEEEEE | bbbxabaabbbbb |
1nsc_A_274 | 1nsc | A | 277 | 289 | TCGFASNKTIECA | EEEESSSSEEEEE | bbbxabaabbbbb |
1o9w_A_71 | 1o9w | A | 72 | 84 | SIYGLTEEVGLLI | EEEESSSSEEEEE | xxxxabaabbbxb |
1oga_E_66 | 1oga | E | 67 | 79 | SVSREKKESFPLT | EE--SSTTB--EE | bbbbabaabbwbb |
1ohe_A_48 | 1ohe | A | 48 | 60 | VYLDITDRLCFAI | EEEESSSSEEEEE | bbbxabaabbbbb |
1oih_A_16 | 1oih | A | 16 | 28 | DVHPVAGRIGAEI | EEEESSSSS-EEE | xbbpabaabMbxb |
1olz_A_91 | 1olz | A | 93 | 105 | VLQPLSATSLYVC | EEEE-SSSEEEEE | bbbwabaabbxbb |
1orf_A_30 | 1orf | A | 31 | 43 | VLLSLDRKTICAG | EEEE-SSS-EEEE | bxbxabaabbbbb |
1orv_A_113 | 1orv | A | 119 | 131 | NYVKQWRHSYTAS | EEEE-SSS-EEEE | vpbxFxaaxbbbb |
1orv_A_60 | 1orv | A | 60 | 71 | .LQWISDHEYLYK | .EEE-SSSEEEEE | .bbxabaNbbxbx |
1ozu_A_15 | 1ozu | A | 19 | 31 | NFEQKESNGPVKV | EEEESSTTS-EEE | bbbbabaabxbxb |
1p57_B_39 | 1p57 | B | 43 | 54 | GGSLLSGDWVLT. | EEEESSSSEEEE. | bbbxabaabbbb. |
1pgu_A_256 | 1pgu | A | 258 | 270 | ALSWLDSQKFATV | EEEESSSSEEEEE | bbbxabaabbbbb |
1pp7_U_57 | 1pp7 | U | 57 | 67 | .LSWISDTEFKM. | .EEESSSS-EEE. | .bbxabaabbbb. |
1pvl_*_8 | 1pvl | - | 8 | 20 | SEKKVDDKITLYK | EEEE-SSSEEEEE | bxbxabaabbbbb |
1q5d_A_396 | 1q5d | A | 396 | 407 | .VFGYHPAFRNIE | .EE---SSB--EE | .xbbapaabxxxa |
1q5y_A_82 | 1q5y | A | 86 | 98 | LHVHINHDDCLEI | EEEE-SSSEEEEE | xbbxabaabbbbb |
1qfj_A_35 | 1qfj | A | 36 | 48 | LMVVMDERDKRPF | EEEESSSS-EEEE | bbxxabaabbbwb |
1qwd_A_127 | 1qwd | A | 129 | 141 | LVCGPDRDYLWIL | EEE-SSTT-EEEE | bbbxabaabbbbb |
1qxm_A_25 | 1qxm | A | 26 | 38 | VLDKISQSEVKLW | EEEE-SSS-EEEE | bxbxabaNxbbxb |
1qy6_A_32 | 1qy6 | A | 37 | 48 | SGVVVGKDTLLT. | EEEE-SSSEEEE. | bebxabaabbbb. |
1rie_*_185 | 1rie | - | 185 | 195 | .YEFTSDDMVIV. | .EEESSSSEEEE. | .bbxabaabbbb. |
1rtf_B_38 | 1rtf | B | 43 | 54 | GGILISSCWILS. | EEEE-SSSEEEE. | xbbxabaabbxb. |
1rtv_A_2 | 1rtv | A | 3 | 15 | ATRLAIPDVILFE | EEE-SSTTSEEEE | bbxxaxaaxbbbb |
1ry9_A_24 | 1ry9 | A | 24 | 35 | .ITDLDSHSAITI | .EEESSTTS-EEE | .xbbabaaxxbbb |
1s9r_A_217 | 1s9r | A | 217 | 228 | .VFIYNNDTLVVG | .EEE-SSSEEEEE | .xbbabaabxbbx |
1s9r_A_274 | 1s9r | A | 274 | 284 | .LTMLDKDKFLY. | .EEE-SSSEEEE. | .bbbabaabbbb. |
1sty_*_10 | 1sty | - | 14 | 26 | LIKAIDGDTVKLM | EEEE-SSSEEEEE | xabxabaabbxbx |
1tcr_B_66 | 1tcr | B | 66 | 78 | KASRPSQENFSLI | EEE--SSSB-EEE | bbbbabaabbbbb |
1uc2_A_6 | 1uc2 | A | 6 | 15 | ..KRIDKIRWEI. | ..EE-SSSEEEE. | ..bxabaabbbb. |
1uir_A_6 | 1uir | A | 7 | 19 | FFEHVTPYETLVR | EEEESSSS-EEEE | bxxxabaabbxbb |
1utc_A_110 | 1utc | A | 110 | 122 | FWKWISLNTVALV | EEEESSSSEEEEE | bbbxabaabbxbb |
1uuf_A_4 | 1uuf | A | 5 | 17 | AVGAYSAKQPLEP | EEEBSSTTS--EE | bbbbabaabxxbw |
1vio_A_165 | 1vio | A | 165 | 177 | KLEILDDYNVNLT | EEEE-SSSEEEEE | bbbxabaabbbbb |
2abl_*_203 | 2abl | - | 203 | 211 | ..LYVSSESRF.. | ..EESSSS-EE.. | ..xbaxaaxbb.. |
2hnt_C_44 | 2hnt | C | 44 | 53 | .ASLISDRWVL.. | .EEESSSS-EE.. | .ebxabaabbb.. |
3lkf_A_8 | 3lkf | A | 8 | 20 | SVKKVDDKVTLYK | EEEE-SSSEEEEE | bbbxabaabbbbb |
3prn_*_193 | 3prn | - | 198 | 210 | AAYKFNDAGTVGL | EEE--SSSEEEEE | bbbxabaabbbbb |
3rp2_A_39 | 3rp2 | A | 43 | 54 | GGFLISRQFVLT. | EEEESSSSEEEE. | bebxabaabbxb. |
4bcl_*_77 | 4bcl | - | 86 | 98 | DIANETKDRRIAV | EEEESSSSEEEEE | bbbxabaabbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h0j_A_2 | 1h0j | A | AC6SDS BINDING SITE FOR CHAIN A | K - 5 |
1h0j_A_2 | 1h0j | A | AC2SDS BINDING SITE FOR CHAIN A | L - 6 |
1h0j_A_2 | 1h0j | A | AC2SDS BINDING SITE FOR CHAIN A | P - 8 |
1h0j_A_2 | 1h0j | A | AC6SDS BINDING SITE FOR CHAIN A | K - 12 |
1h0j_A_2 | 1h0j | A | AC9SDS BINDING SITE FOR CHAIN C | T - 13 |
Clusters included in this Subclass |