Information on SUBCLASS 4.3.4 |
Subclass Accession number: 6273
Subclass: 4.3.4 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 11 Average sequence ID (%) : 20.5 +/- 24.1 Average RMSD (Å) : 0.582 +/- 0.236 Consensus geometry
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Consensus Sequence: | XpXpGpXX |
(φψ)-conformation: | bbaagpbb |
Pattern: | [afgikv] | [ltvy] | x | [CDST] | x | [dehkrsy] | [GKR] | [adknrs] | x | x | [aktv] |
Conservation: | -0.600 | -0.135 | -0.503 | 1.415 | -0.723 | -0.660 | 2.338 | -0.042 | -0.905 | -0.320 | 0.136 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1am2_*_44 | 1am2 | - | 60 | 70 | AVRTVEGLRVT | EEEETTS-EEE | xxbbaagxbbb |
1br9_*_17 | 1br9 | - | 31 | 41 | SGNDIYGNPIK | EEE-TTS-EEE | aebxaavxpbx |
1f3u_B_125 | 1f3u | B | 127 | 137 | FTQCPDGAFEA | EEE-TTS-EEE | bbxbaavxbbb |
1hrh_A_452 | 1hrh | A | 456 | 466 | GYVTNKGRQKV | EEEETTS-EEE | ebbbaavxbbb |
1i1q_A_452 | 1i1q | A | 454 | 464 | GYFTAHGDLDT | EEEETTS-EEE | ebbbaagxbbb |
1i7q_A_452 | 1i7q | A | 454 | 464 | GYFTAVRNLDT | EEEETTS-EEE | ebbbaavxbbb |
1mi8_A_47 | 1mi8 | A | 58 | 68 | ILKTRLGRTIK | EEEETT--EEE | xbbbaagxbbb |
1mu2_A_452 | 1mu2 | A | 455 | 465 | GYVTDRGKDKV | EEEETTS-EEE | bbbbaavxbbb |
1osp_O_109 | 1osp | O | 113 | 123 | KVTSKDKSSTE | EEEETTS-EEE | bbbxaavxbbb |
1p1j_A_25 | 1p1j | A | 37 | 47 | VTKTASGRFDV | EEE-TTS-EEE | bbbxaavbxxb |
1vrt_A_456 | 1vrt | A | 456 | 466 | GYVTNRGRQKV | EEEETTS-EEE | ebbbaavxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | V - 453 |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | G - 454 |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | Y - 455 |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | D - 463 |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | T - 464 |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | C - 465 |
Clusters included in this Subclass |
CLUSTER: HA.3.119 |
CLUSTER: HA.4.165 |
CLUSTER: HA.4.241 |
CLUSTER: HA.5.103 |
CLUSTER: HA.5.119 |