Logo
Information on SUBCLASS 4.4.2
Subclass Accession number: 6278
Subclass: 4.4.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 25

Average sequence ID (%) : 8.5 +/- 12.2
Average RMSD (Å) : 1.144 +/- 0.290

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: pXXpXXXh
(φψ)-conformation: bbaababb
Pattern: xx[hknqrsty]xx[adegknrst]x[dehknpqst]xxxx
Conservation:-1.0001.1381.6230.056-1.4560.519-0.9220.991-0.951-0.452-0.8140.267
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1abr_B_2291abr   B229239.IYSLYDDMVMD.EEETTTTEEEE.bxbaaxabbxb
1b63_A_1071b63   A111122TSRTAEQQEAWQEEE-TT-SSEEEbbbxaabaxbbb
1eej_A_521eej   A5261..YDVSGTAPVN..EE-SSSS-EE..bbaababxbx
1eje_A_1131eje   A113124WTSSRRVKPPRIEE--SSSSS-EEbbxxaabapxbx
1fgu_A_3301fgu   A331342KITVRSNNREVAEEE-SSSS-EEExxbxaabaxbbx
1fwx_A_4121fwx   A415426QLIDISGDKMVLEEEE-SSSS-EExxbxaababxbx
1h0h_B_1261h0h   B126135.RKVAESNQMA..EE-TTSS-EE..bxxaabaxbb.
1h5z_A_4281h5z   A428437..NDHSKMVVQL..EE-SSSS-EE..xbaabaxxbx
1j0p_A_91j0p   A919.LKMDKTKQPVV.EEE-SSSS-EE.xxxaababxbx
1j71_A_2781j71   A278289ILKDSDSSICYFEEE-SSSS-EEEbbbxaaxaxbbx
1juv_A_1051juv   A106117QVSSPNAPFETMEEE-TTSS-EEEbbbpaabapbbx
1kcu_L_851kcu   L8798HCGQSYSYPLTFEEEE-SSSS-EEbbbbaabappbb
1m6o_A_2571m6o   A260271HVQHEGLPKPLTEEE-TTSSS-EEbbbbaaxwbpxb
1mda_H_2691mda   H269280VAKLKNTDGIMIEEEETTTTEEEEbbbxaababbxb
1mda_L_571mda   L6071SCYNPPDPNKYIEEE-SSS--EEExxxxaaxabxbx
1olz_A_2711olz   A277288VLRSPGLKVPVFEE--TT-SS-EEbxbbaababxbx
1q44_A_291q44   A2940KEKGWLVSEIYEEEE-SSSSEEEEbbxxaababbbx
1q52_A_371q52   A3950YHRHVDDATVRVEEEESSSSEEEEbbbxaaxabbbb
1qdl_B_1591qdl   B161172AIHHEEYPIYGVEEEESSSSEEEEbbbxaaxabbbb
1qni_A_4121qni   A415426QLIDISGEEMKLEEEE-SSSS-EEbxbxaababxbx
1s7j_A_1751s7j   A178189TASGDSVDFVSREEE-SSSSEEEEbexxaababbbb
1tn3_*_491tn3   -5061CLKGTKVHMKCFEEE-SSSSEEEEbbxxaaxabbbb
2cth_A_92cth   A919.LKMEATKQPVV.EEE-SSSS-EE.xbxaababxbx
2viu_A_242viu   A2536LVKTITDDQIEVEE--SS-S-EEExbxbaababbxb
3lkf_A_323lkf   A4051FIKDKSYDKDTLEEEETTSSSEEExbxbaababxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1abr_B_2291abr   B     NAGN-ACETYL-D-GLUCOSAMINE Y - 230
1abr_B_2291abr   B     NAGN-ACETYL-D-GLUCOSAMINE S - 231
1abr_B_2291abr   B     NAGN-ACETYL-D-GLUCOSAMINE L - 232
1abr_B_2291abr   B     NAGN-ACETYL-D-GLUCOSAMINE Y - 233
1b63_A_1071b63   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER L - 110
1b63_A_1071b63   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER S - 112
1h0h_B_1261h0h   B     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID R - 126
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 9
1j0p_A_91j0p   A     EOHETHANOL L - 9
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 10
1j0p_A_91j0p   A     EOHETHANOL K - 10
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 11
1j0p_A_91j0p   A     EOHETHANOL M - 11
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 12
1j0p_A_91j0p   A     EOHETHANOL D - 12
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 13
1j0p_A_91j0p   A     EOHETHANOL K - 13
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 14
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 15
1j0p_A_91j0p   A     EOHETHANOL K - 15
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 16
1j0p_A_91j0p   A     EOHETHANOL Q - 16
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 17
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 18
1j0p_A_91j0p   A     EOHETHANOL V - 18
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 19
1j0p_A_91j0p   A     EOHETHANOL V - 19
1j0p_A_91j0p   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 20
1j0p_A_91j0p   A     EOHETHANOL F - 20
1q44_A_291q44   A     MLAMALONIC ACID L - 34
1qni_A_4121qni   A     CACALCIUM ION E - 412
2cth_A_92cth   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 12
2cth_A_92cth   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 13
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0h_B_1261h0h   B AC7EPE BINDING SITE FOR CHAIN AR - 126

Clusters included in this Subclass
CLUSTER: HA.4.182
CLUSTER: HA.5.41
CLUSTER: HA.6.87
CLUSTER: HA.7.22
CLUSTER: HA.7.62