Logo
Information on SUBCLASS 4.10.1
Subclass Accession number: 6290
Subclass: 4.10.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 16.0 +/- 16.2
Average RMSD (Å) : 1.147 +/- 0.221

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXpPXXX
(φψ)-conformation: bbabwpbb
Pattern: xxxx[deknsty][NP]xxxx
Conservation:-0.491-0.410-0.199-0.4380.0292.814-0.394-0.246-0.327-0.339
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ais_A_1371ais   A139148YRVKEPKSVIEEETTTTEEEbxxabwpbbb
1bk1_*_651bk1   -7180GWVNYPQAEYEEETTTTEEEbbbabwxbbb
1eje_A_491eje   A5160PVSIDPPVVAEEETTTTEEExababwwbbb
1elu_A_3601elu   A360369RTIADPDCIREEETTTTEEEbxbabwxbbb
1h09_A_1711h09   A175184QYSSNPFDKNEEE-SSS-EExababwbxbb
1hcu_A_1581hcu   A158167TVFFNPTVRREEE-SSS-EEbbbabwbxbx
1i0r_A_321i0r   A3443QLTSKPVQIAEEETTTTEEExababwxbbb
1j0m_A_7471j0m   A749758VTQLAPTIKFEEE-SSSEEExababwbxbb
1jbw_A_3021jbw   A303312KISDTPLIVIEEETTTTEEExababwxbbb
1mp8_A_4861mp8   A488497GVITENPVWIEEE-SSS-EEebbabpwxbb
1mp9_A_1411mp9   A143152YRMDEPRVVLEEETTTTEEEbxxabwxbbb
1nh2_A_1931nh2   A195204YRMVKPKIVLEEETTTTEEEbxxabwxbbb
1o7k_A_151o7k   A1524EKRFVPSQHYEEE-SSSSEEbxbabwbxbb
1ozn_A_321ozn   A3241VCYNEPKVTTEEE-SSS-EEbbbabwbxbb
1qna_A_591qna   A6271MRIREPKTTAEEETTTTEEEbbbabwxbbb
1sox_A_1081sox   A109118VNSQKPFNAEEEETTTTEEExababwxbbb
2bbk_H_1372bbk   H140149FYQFSPAPAVEEE-SSS-EEbxbabwbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ais_A_1371ais   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE R - 140
1ais_A_1371ais   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE K - 145
1ais_A_1371ais   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE S - 146
1ais_A_1371ais   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE V - 147
1eje_A_491eje   A     FMNFLAVIN MONONUCLEOTIDE T - 49
1eje_A_491eje   A     FMNFLAVIN MONONUCLEOTIDE A - 62
1eje_A_491eje   A     FMNFLAVIN MONONUCLEOTIDE S - 63
1elu_A_3601elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID R - 360
1elu_A_3601elu   A     CSSS-MERCAPTOCYSTEINE R - 360
1elu_A_3601elu   A     CSSS-MERCAPTOCYSTEINE T - 361
1elu_A_3601elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID I - 362
1elu_A_3601elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID R - 369
1hcu_A_1581hcu   A     NAGN-ACETYL-D-GLUCOSAMINE N - 162
1i0r_A_321i0r   A     FMNFLAVIN MONONUCLEOTIDE V - 32
1i0r_A_321i0r   A     FMNFLAVIN MONONUCLEOTIDE C - 45
1i0r_A_321i0r   A     FMNFLAVIN MONONUCLEOTIDE L - 46
1i0r_A_321i0r   A     FMNFLAVIN MONONUCLEOTIDE N - 47
1jbw_A_3021jbw   A     ACQDIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER D - 313
1mp8_A_4861mp8   A     ADPADENOSINE-5'-DIPHOSPHATE M - 499
1mp8_A_4861mp8   A     ADPADENOSINE-5'-DIPHOSPHATE E - 500
1nh2_A_1931nh2   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE I - 194
1nh2_A_1931nh2   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE R - 196
1nh2_A_1931nh2   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE V - 203
1nh2_A_1931nh2   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE L - 205
1o7k_A_151o7k   A     MSESELENOMETHIONINE E - 15
1o7k_A_151o7k   A     MSESELENOMETHIONINE V - 25
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bk1_*_651bk1   * ASGLU 79 AND GLU 170 REFER TO THE CATALYTIC ACIDIC RESIDUES.E - 79

Clusters included in this Subclass
CLUSTER: HA.4.43
CLUSTER: HA.5.40