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PDB code:

Information on SUBCLASS 4.19.1

Subclass Accession number: 6306 Subclass: 4.19.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 7 Average sequence ID (%) : 42.3 +/- 33.3 Average RMSD (Å) : 0.786 +/- 0.353 Consensus geometry d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f3u_B_98	1f3u	B	98	114	WLLRVNGKSGRKFKGIK	EEEEESSTTS-EEEEEE	bbbbxleaaxxbbbbbx
1f3u_D_98	1f3u	D	98	114	WLLRVNGKSGRKFKGIK	EEEEESTTTS-EEEEEE	xbbbxveaaxpbbbbbx
1fv1_B_9	1fv1	B	14	30	ECHFFNGTERVRFLHRD	EEEEETTTTEEEEEEEE	bbbbbleaabbbxbbbb
1i3r_B_35	1i3r	B	40	56	ECHFYNGTQRVRLLVRY	EEEEETGGGEEEEEEEE	bbbbbleaabbbbbxbb
1iak_B_9	1iak	B	14	30	FCYFTNGTQRIRLVIRY	EEEEETGGGEEEEEEEE	bbxbbleaabbbbbbbb
1muj_B_9	1muj	B	14	30	ECYFTNGTQRIRYVTRY	EEEEETTTTEEEEEEEE	xbxbbveaabbbbbbbb
1uvq_B_9	1uvq	B	14	30	MCYFTNGTERVRLVTRY	EEEEETTTTEEEEEEEE	xbbbbleaabbbbbxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1i3r_B_35	1i3r	B	NAGN-ACETYL-D-GLUCOSAMINE	Y - 44
1i3r_B_35	1i3r	B	NAGN-ACETYL-D-GLUCOSAMINE	N - 45
1i3r_B_35	1i3r	B	NAGN-ACETYL-D-GLUCOSAMINE	Q - 48
1i3r_B_35	1i3r	B	NAGN-ACETYL-D-GLUCOSAMINE	R - 49
1iak_B_9	1iak	B	NAGN-ACETYL-D-GLUCOSAMINE	N - 19
1iak_B_9	1iak	B	NAGN-ACETYL-D-GLUCOSAMINE	Q - 22
1uvq_B_9	1uvq	B	FUCFUCOSE	N - 19
1uvq_B_9	1uvq	B	FUCFUCOSE	G - 20
1uvq_B_9	1uvq	B	FUCFUCOSE	T - 21
1uvq_B_9	1uvq	B	NAGN-ACETYL-D-GLUCOSAMINE	E - 22
1uvq_B_9	1uvq	B	FUCFUCOSE	E - 22
1uvq_B_9	1uvq	B	NAGN-ACETYL-D-GLUCOSAMINE	R - 23

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1uvq_B_9	1uvq	B	AC2NAG BINDING SITE FOR CHAIN B	N - 19
1uvq_B_9	1uvq	B	AC3FUC BINDING SITE FOR CHAIN B	T - 21
1uvq_B_9	1uvq	B	AC2NAG BINDING SITE FOR CHAIN B	E - 22

Clusters included in this Subclass

CLUSTER: HA.5.94

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