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PDB code:

Information on SUBCLASS 5.1.2

Subclass Accession number: 6341 Subclass: 5.1.2 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 93 Average sequence ID (%) : 15.3 +/- 16.4 Average RMSD (Å) : 0.712 +/- 0.138 Consensus geometry d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1agj_A_198	1agj	A	199	209	IFNSNGELVGI	EE-TTSEEEEE	bbxaavxxabb
1arb_*_197	1arb	-	198	208	IYSPEKRVLGQ	EE-TTS-EEEE	bbxaavbxaeb
1bru_P_198	1bru	P	201	211	CQGANGQWQVH	EE-TTS-EEEE	bxxaagxxbxa
1cqq_A_52	1cqq	A	62	72	LYNKNGIKLEI	EE-TTS-EEEE	xbxaavxxavb
1d0n_A_67	1d0n	A	74	84	VQLRNGILQYD	EE-TTS-EEEE	bxxaavxbbbb
1d4x_G_43	1d4x	G	50	60	VQLRNGNLQYD	EE-TTSSEEEE	bxbaagxxxbb
1d6a_A_222	1d6a	A	229	239	LVDASGAKWIV	EE-TTS-EEEE	bbxaavxxbxb
1dmg_A_3	1dmg	A	6	16	LLNVKGEKVGT	EE-TTS-EEEE	bbbaavxxaeb
1e1o_A_120	1e1o	A	128	138	FKTQTGELSIH	EE-TT--EEEE	bbxaavxxbbx
1e9i_A_9	1e9i	A	11	21	IIDSRGNPTVE	EE-TTS-EEEE	bbxaavbwbxb
1eax_A_198	1eax	A	201	211	SVEADGRIFQA	EE-TTS-EEEE	bxxaavxxbxa
1eg7_A_1258	1eg7	A	1260	1270	VQTLENTPAFI	EEETT--EEEE	bbxaavxwbbb
1ei5_A_486	1ei5	A	493	503	RRDDKGEITGL	EE-TTS-EEEE	bbxaavxxaeb
1ep5_A_229	1ep5	A	230	240	ILDNQGRVVAI	EE-TTS-EEEE	bbxaavxxabb
1f1s_A_223	1f1s	A	229	239	ISDKSGKIIKE	EE-TT--EEEE	bbbaavxxabb
1f7s_A_66	1f7s	A	74	84	FVTAENCQKSK	EE-TTS-EEEE	bbxaalbxbbb
1f86_A_29	1f86	A	34	44	RKAADDTWEPF	EE-TTS-EEEE	bxxaavbxxwa
1fjr_A_36	1fjr	A	42	52	RILPDDSKQKV	EE-TTS-EEEE	bxbaavxbbxb
1fjs_A_30	1fjs	A	33	43	LINEENEGFCG	EE-TT--EEEE	xbxaavxxabb
1fon_A_190	1fon	A	193	203	CPAADGSWQVH	EE-SSS-EEEE	bxxaagxbbxa
1fxy_A_30	1fxy	A	33	43	LINEENEGFCG	EE-TTS-EEEE	xbxaalbxabx
1g8l_A_346	1g8l	A	354	364	QRNADGELEVT	EE-TTS-EEEE	bxxaalbxbxb
1gg6_B_30	1gg6	B	33	43	LQDKTGFHFCG	EE-TT--EEEE	xbxaavxxabb
1gtm_A_35	1gtm	A	43	53	VEMDDGSVKVF	EE-TTS-EEEE	bxxaavbbbbb
1h3q_A_5	1h3q	A	9	19	IVGHHDNPVFE	EE-TTS-EEEE	bbxaavbxabb
1h4r_A_220	1h4r	A	224	234	IRNKKGTELLL	EEETT--EEEE	bbxaavxxbbx
1h5r_A_147	1h5r	A	150	160	EFDKNGTAISL	EE-TTS-EEEE	bbxaavxxabb
1h6l_A_182	1h6l	A	189	199	NADKNGYISGK	EE-TTSSEEEE	bxxaavbbbbb
1h6y_A_86	1h6y	A	94	104	YVDGSGTQRYD	EE-TTS-EEEE	bbxaavbxbbb
1hqz_1_32	1hqz	1	36	46	SPNAKKEYEPE	EE-TTS-EEEE	bxxaavxxbpa
1ifr_A_526	1ifr	A	530	540	LINSTGEEVAM	EE-TTS-EEEE	xbxaavxxabb
1ihr_A_177	1ihr	A	181	191	DVTPDGRVDNV	EE-TTS-EEEE	bbxaavxxblx
1iic_A_311	1iic	A	316	326	VEQPDGKITDF	EE-TTS-EEEE	bbxaavxxabb
1iin_A_147	1iin	A	150	160	EFDQKGTAVSL	EE-SSS-EEEE	bbxaagxxabb
1iiu_A_39	1iiu	A	46	56	TVDENGQMSAT	EE-TTS-EEEE	bbxaavxxbbb
1iq8_A_543	1iq8	A	546	556	VVNENDELLAT	EE-TT--EEEE	xbxaavxpabb
1j1t_A_121	1j1t	A	128	138	LRNTSGNEEKF	EEBTTS-EEEE	bxxaavbxbbb
1jj2_C_2	1jj2	C	5	15	IYDLDGNTDGE	EE-TTS-EEEE	xbxaavxpbeb
1jkm_A_89	1jkm	A	96	106	ILGVDGNEITL	EE-TTS-EEEE	bbxaavxxbxb
1jof_A_168	1jof	A	173	183	RKLASGEVELV	EE-TTS-EEEE	bxxaagxbbxa
1jof_A_283	1jof	A	288	298	KLRDCGSIEKQ	EE-TTS-EEEE	bbxaagxxabx
1ju2_A_230	1ju2	A	235	245	YRDSNGTPHQA	EE-TTS-EEEE	bbxaavxwbbb
1ju3_A_459	1ju3	A	466	476	DVFPDGRAIAL	EE-TTS-EEEE	bxxaagpbxxa
1ju3_A_6	1ju3	A	14	24	VPMRDGVRLAV	EE-TTS-EEEE	bxxaavxbbxb
1kcf_A_52	1kcf	A	58	68	SQNEDSKVIIH	EE-TTS-EEEE	bxxaavxxbxa
1kgi_A_29	1kgi	A	34	44	KKTADGSWEPF	EE-TTS-EEEE	bxxaavxxbwa
1kt7_A_39	1kt7	A	46	56	SVDENGHMSAT	EE-TT--EEEE	bbxaavxxbbb
1l1n_A_52	1l1n	A	62	72	LEDQAGTNLEI	EE-TTS-EEEE	xbxaavxxavb
1lml_*_226	1lml	-	231	241	QTFSDGHPAVG	EE-TTS-EEEE	bbxaavxwabb
1m98_A_286	1m98	A	293	303	LLNPENKVFFV	EE-TTS-EEEE	bbxaalbxabb
1mo9_A_277	1mo9	A	282	292	EEDANGRVQAV	EE-TTSBEEEE	xbxaavbpabb
1n1t_A_194	1n1t	A	200	210	IADMGGRVFTK	EEETTS-EEEE	bbxaagxbbbb
1n8j_A_119	1n8j	A	123	133	VVDPQGIIQAI	EE-TTSBEEEE	xbxaavxxabb
1n8q_A_449	1n8q	A	455	465	FLKNDGTLRPL	EE-TTS-EEEE	bxxaavxbbxa
1nfz_A_5	1nfz	A	8	18	LLNAQGVPTGT	EE-TT--EEEE	xbxaavxwaeb
1now_A_180	1now	A	180	190	YQDSYGTFTIN	EE-TTS-EEEE	bbxaavxxbbx
1npu_A_31	1npu	A	36	46	RLSPSNQTEKQ	EE-TTS-EEEE	bxxaalbxbxa
1nv8_A_263	1nv8	A	265	275	LKDSAGKYRFL	EE-TTSSEEEE	bxxaavbxabb
1o50_A_116	1o50	A	119	129	VVDEKGEIVGD	EE-TTS-EEEE	bbxaavbxabb
1ob3_A_16	1ob3	A	21	31	AQNNYGETFAL	EEETTS-EEEE	bbxaavxxbxb
1ocv_A_98	1ocv	A	102	112	RFNGAGKVVSM	EE-TTS-EEEE	bbxaavxxabb
1onw_A_356	1onw	A	358	368	VMTPELRIEQV	EE-TT--EEEE	bbxaavbxabb
1oo2_A_29	1oo2	A	34	44	QKTADGGWTQI	EE-TTS-EEEE	bxbaavxbbxa
1os8_A_198	1os8	A	201	211	RKDNADEWIQV	EE-TTS-EEEE	bxxaalbxbxa
1osp_O_121	1osp	O	125	135	KFNEKGEVSEK	EE-TTS-EEEE	bbbaavbxabb
1oxd_A_160	1oxd	A	169	179	HNIEDGSVQLA	EEBTTS-EEEE	bxxaavxbbxb
1oyg_A_311	1oyg	A	317	327	ELNDDYTLKKV	EE-TTSSEEEE	xbxaavxxabx
1pfo_*_404	1pfo	-	414	424	SYDKEGNEVLT	EE-TTS-EEEE	bbxaavxxbbb
1pj5_A_537	1pj5	A	542	552	LLDHAGGVRSD	EE-TTS-EEEE	bbxaavxxabb
1pn0_A_82	1pn0	A	87	97	NPDENGHIRRT	EE-TTS-EEEE	bxxaavbxbxa
1pvm_A_102	1pvm	A	105	115	VVDDPGRVVGI	EE-TT--EEEE	bbxaagxxabb
1pvm_A_154	1pvm	A	157	167	VYNEKGEIKVF	EE-TTS-EEEE	bbbaavxxabb
1q2b_A_13	1q2b	A	18	28	KCSSGGTCTQQ	EE-TTS-EEEE	bbbaagbbbxb
1q8i_A_152	1q8i	A	158	168	ETTRHGELYCI	EE-TTS-EEEE	bbxaavxpabb
1q9i_A_276	1q9i	A	282	292	LKDDKGTVKGI	EE-TTS-EEEE	xbxaavxxaeb
1qfm_A_435	1qfm	A	442	452	YPSKDGTKIPM	EE-TTS-EEEE	bxxaavxxbwb
1qo8_A_271	1qo8	A	277	287	VVNDDHSVVGA	EE-TTSBEEEE	bbxaalbxaeb
1qtf_A_189	1qtf	A	190	200	IFNLKGELIGI	EE-TT--EEEE	bbbaavxxaeb
1qy6_A_172	1qy6	A	173	183	VFNEKNEVIGI	EE-TTS-EEEE	bbxaavbxabb
1qz1_A_73	1qz1	A	79	89	VTAEDGTQSEA	EE-TTS-EEEE	bbxaavxbbbb
1ri6_A_152	1ri6	A	157	167	TVSDDGHLVAQ	EE-TTS-EEEE	xxxaavxbbpx
1ri6_A_16	1ri6	A	21	31	NLNHEGALTLT	EE-TTS-EEEE	xbxaavxbbxa
1sgv_A_264	1sgv	A	266	276	ACDADGRVIAL	EE-TTS-EEEE	xbxaavxxabb
1svp_A_115	1svp	A	118	128	VKNEDGDVIGH	EE-TTS-EEEE	bbxaavxxaeb
1svp_A_218	1svp	A	219	229	IMDNSGRVVAI	EE-TTS-EEEE	bbbaavxxabb
1ut9_A_240	1ut9	A	243	253	LKNAAGVVVLE	EE-TTS-EEEE	xbxaavxxabb
1uyr_A_1537	1uyr	A	1543	1553	IEDENGELTEV	EE-TTS-EEEE	bxxaavxxbxb
1v04_A_244	1v04	A	249	259	EKHANWTLTPL	EE-TTS-EEEE	xxxaavpbbwa
1v3e_A_377	1v3e	A	385	395	DKGLNSIPKLK	EE-TT--EEEE	bbbaaUxxbbb
1v8k_A_102	1v8k	A	109	119	KLKVDLTKYLE	EE-TT--EEEE	bbxaavxxbbb
1vjf_A_42	1vjf	A	49	59	LKDAKGQLWLI	EEETTS-EEEE	bbxaavxxbbb
1wba_*_142	1wba	-	147	157	STDPEGKKRLV	EE-TT--EEEE	bxxaavxxxxb
3rp2_A_30	3rp2	A	35	45	IVTEKGLRVIC	EE-TTS-EEEE	bxxaavbxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cqq_A_52	1cqq	A	AG74-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE -3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER	K - 69
1cqq_A_52	1cqq	A	AG74-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE -3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER	E - 71
1d4x_G_43	1d4x	G	CACALCIUM ION	A - 43
1eax_A_198	1eax	A	BENBENZAMIDINE	V - 213
1ep5_A_229	1ep5	A	UREUREA	R - 236
1f7s_A_66	1f7s	A	LDALAURYL DIMETHYLAMINE-N-OXIDE	Y - 70
1f7s_A_66	1f7s	A	LDALAURYL DIMETHYLAMINE-N-OXIDE	F - 72
1f7s_A_66	1f7s	A	LDALAURYL DIMETHYLAMINE-N-OXIDE	F - 86
1f7s_A_66	1f7s	A	LDALAURYL DIMETHYLAMINE-N-OXIDE	I - 88
1f7s_A_66	1f7s	A	LDALAURYL DIMETHYLAMINE-N-OXIDE	W - 90
1fxy_A_30	1fxy	A	CH2METHYLENE GROUP	F - 41
1fxy_A_30	1fxy	A	CH2METHYLENE GROUP	C - 42
1gg6_B_30	1gg6	B	APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE	Q - 34
1gg6_B_30	1gg6	B	APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE	T - 37
1gg6_B_30	1gg6	B	APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE	G - 38
1gg6_B_30	1gg6	B	APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE	F - 39
1gg6_B_30	1gg6	B	APF1,1,1-TRIFLUORO-3-ACETAMIDO-4-PHENYL BUTAN-2-ONE(N-ACETYL-L-PHENYLALANYL TRIFLUOROMETHYL KETONE)	F - 41
1gg6_B_30	1gg6	B	APF1,1,1-TRIFLUORO-3-ACETAMIDO-4-PHENYL BUTAN-2-ONE(N-ACETYL-L-PHENYLALANYL TRIFLUOROMETHYL KETONE)	C - 42
1h5r_A_147	1h5r	A	G1PALPHA-D-GLUCOSE-1-PHOSPHATE	G - 147
1h5r_A_147	1h5r	A	G1PALPHA-D-GLUCOSE-1-PHOSPHATE	V - 148
1h5r_A_147	1h5r	A	G1PALPHA-D-GLUCOSE-1-PHOSPHATE	E - 162
1iin_A_147	1iin	A	UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE	G - 147
1iin_A_147	1iin	A	UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE	V - 148
1iin_A_147	1iin	A	UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE	E - 162
1iiu_A_39	1iiu	A	RTLRETINOL	V - 41
1iiu_A_39	1iiu	A	RTLRETINOL	A - 43
1iiu_A_39	1iiu	A	RTLRETINOL	Q - 44
1iiu_A_39	1iiu	A	RTLRETINOL	F - 45
1iiu_A_39	1iiu	A	RTLRETINOL	A - 55
1iiu_A_39	1iiu	A	RTLRETINOL	T - 56
1iiu_A_39	1iiu	A	RTLRETINOL	A - 57
1iiu_A_39	1iiu	A	RTLRETINOL	V - 61
1j1t_A_121	1j1t	A	CACALCIUM ION	I - 121
1j1t_A_121	1j1t	A	CACALCIUM ION	F - 122
1j1t_A_121	1j1t	A	CACALCIUM ION	D - 123
1jof_A_168	1jof	A	MSESELENOMETHIONINE	L - 169
1jof_A_168	1jof	A	MSESELENOMETHIONINE	T - 171
1jof_A_168	1jof	A	MSESELENOMETHIONINE	V - 183
1jof_A_168	1jof	A	MSESELENOMETHIONINE	G - 184
1jof_A_168	1jof	A	MSESELENOMETHIONINE	S - 185
1jof_A_168	1jof	A	MSESELENOMETHIONINE	V - 186
1jof_A_283	1jof	A	MSESELENOMETHIONINE	I - 284
1jof_A_283	1jof	A	MSESELENOMETHIONINE	A - 285
1jof_A_283	1jof	A	MSESELENOMETHIONINE	G - 286
1jof_A_283	1jof	A	MSESELENOMETHIONINE	F - 287
1jof_A_283	1jof	A	MSESELENOMETHIONINE	K - 288
1jof_A_283	1jof	A	MSESELENOMETHIONINE	L - 289
1jof_A_283	1jof	A	MSESELENOMETHIONINE	I - 295
1kt7_A_39	1kt7	A	RTLRETINOL	I - 41
1kt7_A_39	1kt7	A	RTLRETINOL	E - 44
1m98_A_286	1m98	A	HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE	M - 286
1m98_A_286	1m98	A	HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE	I - 288
1m98_A_286	1m98	A	HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE	W - 290
1m98_A_286	1m98	A	HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE	I - 305
1n1t_A_194	1n1t	A	DAN2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID	Q - 199
1nfz_A_5	1nfz	A	MNMANGANESE (II) ION	V - 6
1now_A_180	1now	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 180
1now_A_180	1now	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 190
1now_A_180	1now	A	GOLGLYCEROL	I - 195
1now_A_180	1now	A	GOLGLYCEROL	D - 196
1nv8_A_263	1nv8	A	MEQN5-METHYLGLUTAMINE	R - 273
1oxd_A_160	1oxd	A	NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE	F - 165
1oxd_A_160	1oxd	A	NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE	I - 167
1oxd_A_160	1oxd	A	NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE	Q - 183
1oyg_A_311	1oyg	A	CACALCIUM ION	G - 311
1oyg_A_311	1oyg	A	EDO1,2-ETHANEDIOL	Y - 322
1oyg_A_311	1oyg	A	EDO1,2-ETHANEDIOL	T - 323
1oyg_A_311	1oyg	A	EDO1,2-ETHANEDIOL	L - 324
1pvm_A_154	1pvm	A	HGMERCURY (II) ION	L - 154
1pvm_A_154	1pvm	A	HGMERCURY (II) ION	C - 169
1q9i_A_276	1q9i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 276
1q9i_A_276	1q9i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 277
1q9i_A_276	1q9i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 278
1q9i_A_276	1q9i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 279
1qfm_A_435	1qfm	A	SGMMONOTHIOGLYCEROL	Y - 442
1qfm_A_435	1qfm	A	SGMMONOTHIOGLYCEROL	P - 443
1qfm_A_435	1qfm	A	SGMMONOTHIOGLYCEROL	S - 444
1qfm_A_435	1qfm	A	SGMMONOTHIOGLYCEROL	K - 445
1qfm_A_435	1qfm	A	GOLGLYCEROL	D - 446
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 271
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 272
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 273
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 274
1v3e_A_377	1v3e	A	ZMRZANAMIVIR	M - 377
1v3e_A_377	1v3e	A	NAGN-ACETYL-D-GLUCOSAMINE	I - 391
1v3e_A_377	1v3e	A	NAGN-ACETYL-D-GLUCOSAMINE	P - 392
1vjf_A_42	1vjf	A	MSESELENOMETHIONINE	H - 43
1vjf_A_42	1vjf	A	GOLGLYCEROL	H - 43
1vjf_A_42	1vjf	A	GOLGLYCEROL	T - 44
1vjf_A_42	1vjf	A	MSESELENOMETHIONINE	F - 48
1vjf_A_42	1vjf	A	MSESELENOMETHIONINE	K - 50
1vjf_A_42	1vjf	A	MSESELENOMETHIONINE	G - 54
1vjf_A_42	1vjf	A	MSESELENOMETHIONINE	L - 56
1vjf_A_42	1vjf	A	MSESELENOMETHIONINE	W - 57

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1agj_A_198	1agj	A	SNACATALYTIC TETRAD OF SERINE PROTEASE.	S - 211
1h6y_A_86	1h6y	A	XBAXYLAN BINDING SITE FOR CHAIN A	Y - 103

Clusters included in this Subclass

CLUSTER: HA.4.17

CLUSTER: HA.4.75

CLUSTER: HA.5.23

CLUSTER: HA.6.5

CLUSTER: HA.6.83

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