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Information on SUBCLASS 5.1.3
Subclass Accession number: 6342
Subclass: 5.1.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 56

Average sequence ID (%) : 17.9 +/- 20.2
Average RMSD (Å) : 0.441 +/- 0.263

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXXXpcpXX
(φψ)-conformation: bbpaagpbb
Pattern: xxxxx[degknqs][afgklm]xxxx
Conservation:-0.686-0.615-0.043-0.593-0.3800.9342.664-0.021-0.100-0.556-0.604
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a2y_B_461a2y   B4959GMIWGDGNTDYEEE-TTS-EEEebbxaavxbbb
1acc_*_6391acc   -645655EIEDTEGLKEVEEE-TTS-EEEbbbxaavxbbx
1b34_A_241b34   A3040TGVDVSMNTHLEEE-TT--EEEabbbaavpbbb
1b6r_A_1601b6r   A166176GARGFDGSTVFEEE-TTS-EEEbbbbaavxbbb
1c3m_A_411c3m   A4757VYKDKDNIEYHEEE-TT--EEEbbbxaavxxbb
1c5d_B_461c5d   B4959AAISSGGSPYYEEE-TT--EEEbbbxaavxwbb
1dn0_B_461dn0   B4959GEINHSGSTNYEEE-TT--EEEbbbbaagxbbb
1dqq_B_441dqq   B4959GYISYSGSTYYEEE-TTS-EEEebbxaagxbbb
1e25_A_2401e25   A249259IILLPDGRPLLEEE-TTS-EEEbbxxaavxxbx
1em2_A_2601em2   A262272EKNNEYGDTVYEEE-TT--EEEabbbaavxbbb
1ezv_X_461ezv   X5060GYISNVGDNNYEEEESS--EEEebbxaagxxbb
1f58_H_451f58   H4959GYIHYSAGTNYEEEETTS-EEEebbxaavxbbb
1fng_A_71fng   A1222FYLLPDKRGEFEEETTTTEEEEbbbbwavbbbb
1fns_H_2601fns   H263273GMIWGDGSTDYEEE-TTS-EEEebbxaavxbbb
1g0u_2_1071g0u   2111121YTIPLGGSVHKEEE-TTS--EEbbbxaavxbbx
1gig_H_461gig   H4959GVIWAGGNTNYEEE-TTS-EEEebbxaavxbbb
1gpl_*_4141gpl   -421431IVETNVGKQFNEEE-TTS-EEEbbbxaavxbbx
1gpo_H_451gpo   H4959GFVQYSGETAYEEE-TTS-EEEebbxaavxbbb
1gpp_A_991gpp   A111121QKKAPDGRIVEEEE-TTS-EEEbbxxaavxxbx
1hpl_A_4151hpl   A421431TVERNDGSVFNEEE-TTS-EEEbbbxaavxbbb
1hyx_H_451hyx   H4959VSISSGGSIYYEEE-TT--EEEbbbxaagxbbb
1jih_A_4381jih   A446456SLKTKSYEVYREEE-TT--EEEbbbxaalxbbb
1k0g_A_3931k0g   A395405GYLSFCGNMDTEEEETTS-EEEebbxaagxbbb
1kcv_H_461kcv   H5060GYISYSGSTSYEEEETTS-EEEebbxaagxbbb
1kxt_B_451kxt   B4959ARIFSDGSANYEEE-TTS-EEEbbbxaagxbbb
1kxv_C_451kxv   C4959SGIDNDGTTTYEEE-TT--EEEbbbbaavxxbb
1l7t_H_451l7t   H4959ASIVSGGNTYYEEE-TTS-EEEbbbxaagxbbb
1ljo_A_281ljo   A3444EGVDDYMNLYLEEE-TT--EEEabbbaavxbbb
1lo0_H_451lo0   H4958ASISYGGLIY.EEE-TT--EE.bbbxaavxbb.
1lo4_H_451lo4   H4959ASISYGGLLYFEEE-TT--EEEbbbxaavpbbb
1lpb_B_4151lpb   B421431IVETNVGKQFNEEEETTS-EEEbxbxaavxbbb
1lya_B_2071lya   B212221QVEVASGLTL.EEEETTS-EE.bbbbaagpbb.
1m5q_1_331m5q   13949HAVDNQLNIVLEEE-TT--EEEabbbaavxbbb
1mdb_A_4091mdb   A415425VRLTRDGYIVVEEE-TTS-EEEbbbxaavxbbx
1n9p_A_2251n9p   A235245SRQTPEGEFLPEEE-TTS-EEExbbxaavxxbw
1nbc_A_511nbc   A5969AIIGSNGSYNGEEE-TT--EEEbbbxaavxbbx
1nc2_B_451nc2   B4959GVIWSGGGTAYEEE-TTS-EEEbbbxaagxbbb
1ncw_H_441ncw   H4959GYINYSGFTSHEEEETTS-EEEebbxaavxbbb
1ndg_B_3441ndg   B349359GYISFSGNTFYEEE-TTS-EEEebbxaavxbbb
1o20_A_951o20   A98108SWVREDGLRIAEEE-TTS-EEEbbbxaavxxbb
1oj4_A_31oj4   A1828TGQRADGYHTLEEE-TTS-EEENebxaavxbxb
1ors_B_461ors   B5060GYINYSGTTSYEEEETTS-EEEebbxaavxbbb
1osp_O_1321osp   O136146IITRADGTRLEEEE-TTS-EEEbbxxaavxbbb
1p4b_H_521p4b   H5666GVIWGDGITDYEEE-TTS-EEEebbxaavxbbb
1poi_B_501poi   B5060HIIVESGLMDCEEEETTTEEEEbxbbaavxxvx
1q15_A_1041q15   A107117FIDEPNGELTVEEE-TTS-EEEbbxxaavxbbb
1qho_A_6461qho   A652662FIKRADGTIQWEEE-TTS-EEEbxbxaavxbbx
1qz1_A_731qz1   A7888VVTAEDGTQSEEEE-TTS-EEEbbbxaavxbbb
1svp_A_2391svp   A245255VTWNSKGKTIKEEE-TT--EEEbbbxaavxxbb
1uac_H_441uac   H4959GYVSSFGSTFYEEE-TTS-EEEebbxaavxbbb
2acy_*_362acy   -3949VQNTDQGTVQGEEE-TTS-EEEbbxbaavbbbe
2f5b_H_482f5b   H5161AIIYSDDDKRYEEEETT--EEEbbbbaavxbbb
2sli_*_4472sli   -451461FRVDGEYNLYQEEE-TT-BEEEbbbxaavxxbb
3fru_A_913fru   A98108CELAPDNSSLPEEE-TTS-EEEbbxxaavxxbw
3pmg_A_3723pmg   A372382LCGEESFGTGSEEEETTTEEEEbbbbaalbbbb
3pmg_A_4893pmg   A490500RLIFADGSRIIEEEETTS-EEEbbxxaagxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1em2_A_2601em2   A     MSESELENOMETHIONINE D - 269
1em2_A_2601em2   A     MSESELENOMETHIONINE V - 271
1f58_H_451f58   H     AIBALPHA-AMINOISOBUTYRIC ACID Y - 50
1f58_H_451f58   H     AIBALPHA-AMINOISOBUTYRIC ACID T - 57
1f58_H_451f58   H     AIBALPHA-AMINOISOBUTYRIC ACID N - 58
1hyx_H_451hyx   H     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER W - 47
1hyx_H_451hyx   H     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER S - 50
1hyx_H_451hyx   H     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER I - 51
1hyx_H_451hyx   H     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER S - 52
1hyx_H_451hyx   H     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER S - 56
1hyx_H_451hyx   H     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER Y - 58
1k0g_A_3931k0g   A     TRPTRYPTOPHAN I - 394
1k0g_A_3931k0g   A     TRPTRYPTOPHAN G - 395
1k0g_A_3931k0g   A     TRPTRYPTOPHAN Y - 396
1k0g_A_3931k0g   A     TRPTRYPTOPHAN D - 404
1k0g_A_3931k0g   A     TRPTRYPTOPHAN T - 405
1k0g_A_3931k0g   A     TRPTRYPTOPHAN S - 406
1lo0_H_451lo0   H     BC13-{[(9-CYANO-9,10-DIHYDRO-10-METHYLACRIDIN-9-YL) CARBONYL]AMINO}PROPANOIC ACID S - 50
1lo0_H_451lo0   H     BC13-{[(9-CYANO-9,10-DIHYDRO-10-METHYLACRIDIN-9-YL) CARBONYL]AMINO}PROPANOIC ACID I - 51
1lo0_H_451lo0   H     BC13-{[(9-CYANO-9,10-DIHYDRO-10-METHYLACRIDIN-9-YL) CARBONYL]AMINO}PROPANOIC ACID S - 52
1lo0_H_451lo0   H     BC13-{[(9-CYANO-9,10-DIHYDRO-10-METHYLACRIDIN-9-YL) CARBONYL]AMINO}PROPANOIC ACID Y - 53
1m5q_1_331m5q   1     GOLGLYCEROL Y - 34
1m5q_1_331m5q   1     CDCADMIUM ION H - 39
1m5q_1_331m5q   1     GOLGLYCEROL H - 39
1m5q_1_331m5q   1     MSESELENOMETHIONINE Q - 44
1m5q_1_331m5q   1     MSESELENOMETHIONINE L - 45
1m5q_1_331m5q   1     MSESELENOMETHIONINE N - 46
1m5q_1_331m5q   1     MSESELENOMETHIONINE I - 47
1m5q_1_331m5q   1     CDCADMIUM ION V - 48
1m5q_1_331m5q   1     GOLGLYCEROL A - 50
1m5q_1_331m5q   1     GOLGLYCEROL N - 51
1m5q_1_331m5q   1     GOLGLYCEROL N - 54
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE Y - 409
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE T - 411
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE G - 412
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE D - 413
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE V - 425
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE G - 427
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE R - 428
1n9p_A_2251n9p   A     MSESELENOMETHIONINE S - 225
1n9p_A_2251n9p   A     MSESELENOMETHIONINE A - 226
1nc2_B_451nc2   B     DOE(S)-2-(4-(2-(2-HYDROXYETHYLTHIO)-ACETAMIDO)-BENZYL)-1, 4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE W - 47
1nc2_B_451nc2   B     DOE(S)-2-(4-(2-(2-HYDROXYETHYLTHIO)-ACETAMIDO)-BENZYL)-1, 4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE V - 50
1nc2_B_451nc2   B     YT3YTTRIUM (III) ION W - 52
1nc2_B_451nc2   B     DOE(S)-2-(4-(2-(2-HYDROXYETHYLTHIO)-ACETAMIDO)-BENZYL)-1, 4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE W - 52
1nc2_B_451nc2   B     DOE(S)-2-(4-(2-(2-HYDROXYETHYLTHIO)-ACETAMIDO)-BENZYL)-1, 4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE S - 53
1nc2_B_451nc2   B     DOE(S)-2-(4-(2-(2-HYDROXYETHYLTHIO)-ACETAMIDO)-BENZYL)-1, 4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE G - 54
1ncw_H_441ncw   H     BEZBENZOIC ACID W - 47
1ncw_H_441ncw   H     BEZBENZOIC ACID Y - 50
1ncw_H_441ncw   H     GOLGLYCEROL Y - 53
1oj4_A_31oj4   A     MSESELENOMETHIONINE T - 3
1oj4_A_31oj4   A     MSESELENOMETHIONINE W - 5
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL K - 10
1oj4_A_31oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 10
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL N - 12
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL L - 15
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL Q - 20
1oj4_A_31oj4   A     MSESELENOMETHIONINE R - 21
1oj4_A_31oj4   A     MSESELENOMETHIONINE D - 23
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL G - 24
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL Y - 25
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL H - 26
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL T - 27
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL L - 28
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL T - 30
1oj4_A_31oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL F - 32
1oj4_A_31oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 39
1oj4_A_31oj4   A     MSESELENOMETHIONINE I - 43
1oj4_A_31oj4   A     MSESELENOMETHIONINE E - 44
1qho_A_6461qho   A     MALMALTOSE Q - 648
1qho_A_6461qho   A     MALMALTOSE K - 650
1qho_A_6461qho   A     MALMALTOSE W - 662
3fru_A_913fru   A     NAGN-ACETYL-D-GLUCOSAMINE P - 102
3fru_A_913fru   A     NAGN-ACETYL-D-GLUCOSAMINE D - 103
3fru_A_913fru   A     NAGN-ACETYL-D-GLUCOSAMINE N - 104
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AK - 10
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AN - 12
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AG - 24
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AY - 25
1oj4_A_31oj4   A AC2CDM BINDING SITE FOR CHAIN AH - 26

Clusters included in this Subclass
CLUSTER: HA.4.28
CLUSTER: HA.4.84
CLUSTER: HA.4.98
CLUSTER: HA.5.20
CLUSTER: HA.5.44
CLUSTER: HA.6.14