Information on SUBCLASS 5.1.3 |
Subclass Accession number: 6342
Subclass: 5.1.3 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 56 Average sequence ID (%) : 17.9 +/- 20.2 Average RMSD (Å) : 0.441 +/- 0.263 Consensus geometry
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Consensus Sequence: | XXXXpcpXX |
(φψ)-conformation: | bbpaagpbb |
Pattern: | x | x | x | x | x | [degknqs] | [afgklm] | x | x | x | x |
Conservation: | -0.686 | -0.615 | -0.043 | -0.593 | -0.380 | 0.934 | 2.664 | -0.021 | -0.100 | -0.556 | -0.604 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a2y_B_46 | 1a2y | B | 49 | 59 | GMIWGDGNTDY | EEE-TTS-EEE | ebbxaavxbbb |
1acc_*_639 | 1acc | - | 645 | 655 | EIEDTEGLKEV | EEE-TTS-EEE | bbbxaavxbbx |
1b34_A_24 | 1b34 | A | 30 | 40 | TGVDVSMNTHL | EEE-TT--EEE | abbbaavpbbb |
1b6r_A_160 | 1b6r | A | 166 | 176 | GARGFDGSTVF | EEE-TTS-EEE | bbbbaavxbbb |
1c3m_A_41 | 1c3m | A | 47 | 57 | VYKDKDNIEYH | EEE-TT--EEE | bbbxaavxxbb |
1c5d_B_46 | 1c5d | B | 49 | 59 | AAISSGGSPYY | EEE-TT--EEE | bbbxaavxwbb |
1dn0_B_46 | 1dn0 | B | 49 | 59 | GEINHSGSTNY | EEE-TT--EEE | bbbbaagxbbb |
1dqq_B_44 | 1dqq | B | 49 | 59 | GYISYSGSTYY | EEE-TTS-EEE | ebbxaagxbbb |
1e25_A_240 | 1e25 | A | 249 | 259 | IILLPDGRPLL | EEE-TTS-EEE | bbxxaavxxbx |
1em2_A_260 | 1em2 | A | 262 | 272 | EKNNEYGDTVY | EEE-TT--EEE | abbbaavxbbb |
1ezv_X_46 | 1ezv | X | 50 | 60 | GYISNVGDNNY | EEEESS--EEE | ebbxaagxxbb |
1f58_H_45 | 1f58 | H | 49 | 59 | GYIHYSAGTNY | EEEETTS-EEE | ebbxaavxbbb |
1fng_A_7 | 1fng | A | 12 | 22 | FYLLPDKRGEF | EEETTTTEEEE | bbbbwavbbbb |
1fns_H_260 | 1fns | H | 263 | 273 | GMIWGDGSTDY | EEE-TTS-EEE | ebbxaavxbbb |
1g0u_2_107 | 1g0u | 2 | 111 | 121 | YTIPLGGSVHK | EEE-TTS--EE | bbbxaavxbbx |
1gig_H_46 | 1gig | H | 49 | 59 | GVIWAGGNTNY | EEE-TTS-EEE | ebbxaavxbbb |
1gpl_*_414 | 1gpl | - | 421 | 431 | IVETNVGKQFN | EEE-TTS-EEE | bbbxaavxbbx |
1gpo_H_45 | 1gpo | H | 49 | 59 | GFVQYSGETAY | EEE-TTS-EEE | ebbxaavxbbb |
1gpp_A_99 | 1gpp | A | 111 | 121 | QKKAPDGRIVE | EEE-TTS-EEE | bbxxaavxxbx |
1hpl_A_415 | 1hpl | A | 421 | 431 | TVERNDGSVFN | EEE-TTS-EEE | bbbxaavxbbb |
1hyx_H_45 | 1hyx | H | 49 | 59 | VSISSGGSIYY | EEE-TT--EEE | bbbxaagxbbb |
1jih_A_438 | 1jih | A | 446 | 456 | SLKTKSYEVYR | EEE-TT--EEE | bbbxaalxbbb |
1k0g_A_393 | 1k0g | A | 395 | 405 | GYLSFCGNMDT | EEEETTS-EEE | ebbxaagxbbb |
1kcv_H_46 | 1kcv | H | 50 | 60 | GYISYSGSTSY | EEEETTS-EEE | ebbxaagxbbb |
1kxt_B_45 | 1kxt | B | 49 | 59 | ARIFSDGSANY | EEE-TTS-EEE | bbbxaagxbbb |
1kxv_C_45 | 1kxv | C | 49 | 59 | SGIDNDGTTTY | EEE-TT--EEE | bbbbaavxxbb |
1l7t_H_45 | 1l7t | H | 49 | 59 | ASIVSGGNTYY | EEE-TTS-EEE | bbbxaagxbbb |
1ljo_A_28 | 1ljo | A | 34 | 44 | EGVDDYMNLYL | EEE-TT--EEE | abbbaavxbbb |
1lo0_H_45 | 1lo0 | H | 49 | 58 | ASISYGGLIY. | EEE-TT--EE. | bbbxaavxbb. |
1lo4_H_45 | 1lo4 | H | 49 | 59 | ASISYGGLLYF | EEE-TT--EEE | bbbxaavpbbb |
1lpb_B_415 | 1lpb | B | 421 | 431 | IVETNVGKQFN | EEEETTS-EEE | bxbxaavxbbb |
1lya_B_207 | 1lya | B | 212 | 221 | QVEVASGLTL. | EEEETTS-EE. | bbbbaagpbb. |
1m5q_1_33 | 1m5q | 1 | 39 | 49 | HAVDNQLNIVL | EEE-TT--EEE | abbbaavxbbb |
1mdb_A_409 | 1mdb | A | 415 | 425 | VRLTRDGYIVV | EEE-TTS-EEE | bbbxaavxbbx |
1n9p_A_225 | 1n9p | A | 235 | 245 | SRQTPEGEFLP | EEE-TTS-EEE | xbbxaavxxbw |
1nbc_A_51 | 1nbc | A | 59 | 69 | AIIGSNGSYNG | EEE-TT--EEE | bbbxaavxbbx |
1nc2_B_45 | 1nc2 | B | 49 | 59 | GVIWSGGGTAY | EEE-TTS-EEE | bbbxaagxbbb |
1ncw_H_44 | 1ncw | H | 49 | 59 | GYINYSGFTSH | EEEETTS-EEE | ebbxaavxbbb |
1ndg_B_344 | 1ndg | B | 349 | 359 | GYISFSGNTFY | EEE-TTS-EEE | ebbxaavxbbb |
1o20_A_95 | 1o20 | A | 98 | 108 | SWVREDGLRIA | EEE-TTS-EEE | bbbxaavxxbb |
1oj4_A_3 | 1oj4 | A | 18 | 28 | TGQRADGYHTL | EEE-TTS-EEE | Nebxaavxbxb |
1ors_B_46 | 1ors | B | 50 | 60 | GYINYSGTTSY | EEEETTS-EEE | ebbxaavxbbb |
1osp_O_132 | 1osp | O | 136 | 146 | IITRADGTRLE | EEE-TTS-EEE | bbxxaavxbbb |
1p4b_H_52 | 1p4b | H | 56 | 66 | GVIWGDGITDY | EEE-TTS-EEE | ebbxaavxbbb |
1poi_B_50 | 1poi | B | 50 | 60 | HIIVESGLMDC | EEEETTTEEEE | bxbbaavxxvx |
1q15_A_104 | 1q15 | A | 107 | 117 | FIDEPNGELTV | EEE-TTS-EEE | bbxxaavxbbb |
1qho_A_646 | 1qho | A | 652 | 662 | FIKRADGTIQW | EEE-TTS-EEE | bxbxaavxbbx |
1qz1_A_73 | 1qz1 | A | 78 | 88 | VVTAEDGTQSE | EEE-TTS-EEE | bbbxaavxbbb |
1svp_A_239 | 1svp | A | 245 | 255 | VTWNSKGKTIK | EEE-TT--EEE | bbbxaavxxbb |
1uac_H_44 | 1uac | H | 49 | 59 | GYVSSFGSTFY | EEE-TTS-EEE | ebbxaavxbbb |
2acy_*_36 | 2acy | - | 39 | 49 | VQNTDQGTVQG | EEE-TTS-EEE | bbxbaavbbbe |
2f5b_H_48 | 2f5b | H | 51 | 61 | AIIYSDDDKRY | EEEETT--EEE | bbbbaavxbbb |
2sli_*_447 | 2sli | - | 451 | 461 | FRVDGEYNLYQ | EEE-TT-BEEE | bbbxaavxxbb |
3fru_A_91 | 3fru | A | 98 | 108 | CELAPDNSSLP | EEE-TTS-EEE | bbxxaavxxbw |
3pmg_A_372 | 3pmg | A | 372 | 382 | LCGEESFGTGS | EEEETTTEEEE | bbbbaalbbbb |
3pmg_A_489 | 3pmg | A | 490 | 500 | RLIFADGSRII | EEEETTS-EEE | bbxxaagxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oj4_A_3 | 1oj4 | A | AC2CDM BINDING SITE FOR CHAIN A | K - 10 |
1oj4_A_3 | 1oj4 | A | AC2CDM BINDING SITE FOR CHAIN A | N - 12 |
1oj4_A_3 | 1oj4 | A | AC2CDM BINDING SITE FOR CHAIN A | G - 24 |
1oj4_A_3 | 1oj4 | A | AC2CDM BINDING SITE FOR CHAIN A | Y - 25 |
1oj4_A_3 | 1oj4 | A | AC2CDM BINDING SITE FOR CHAIN A | H - 26 |
Clusters included in this Subclass |
CLUSTER: HA.4.28 |
CLUSTER: HA.4.84 |
CLUSTER: HA.4.98 |
CLUSTER: HA.5.20 |
CLUSTER: HA.5.44 |
CLUSTER: HA.6.14 |